Analysis of interatomic Contacts of Structural Units in PDB entry:
7B8Q

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7B8Q entry

There are 3 chains in PDB entry 7B8Q (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	VAL 1023
B	MET 1	VAL 1023
C	MET 1	VAL 1023

There are120 helices in PDB entry 7B8Q. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	1	8	Right-handed alpha
Helix 2	AA2	A	8	27	Right-handed alpha
Helix 3	AA3	A	28	30	Right-handed 310
Helix 4	AA4	A	53	62	Right-handed alpha
Helix 5	AA5	A	62	69	Right-handed alpha
Helix 6	AA6	A	99	114	Right-handed alpha
Helix 7	AA7	A	119	126	Right-handed alpha
Helix 8	AA8	A	150	162	Right-handed alpha
Helix 9	AA9	A	162	168	Right-handed alpha
Helix 10	AB1	A	189	197	Right-handed alpha
Helix 11	AB2	A	199	211	Right-handed alpha
Helix 12	AB3	A	242	247	Right-handed alpha
Helix 13	AB4	A	261	265	Right-handed alpha
Helix 14	AB5	A	299	314	Right-handed alpha
Helix 15	AB6	A	329	360	Right-handed alpha
Helix 16	AB7	A	361	366	Right-handed alpha
Helix 17	AB8	A	367	386	Right-handed alpha
Helix 18	AB9	A	391	423	Right-handed alpha
Helix 19	AC1	A	426	454	Right-handed alpha
Helix 20	AC2	A	455	457	Right-handed 310
Helix 21	AC3	A	460	496	Right-handed alpha
Helix 22	AC4	A	512	533	Right-handed alpha
Helix 23	AC5	A	534	555	Right-handed alpha
Helix 24	AC6	A	580	597	Right-handed alpha
Helix 25	AC7	A	628	632	Right-handed 310
Helix 26	AC8	A	635	648	Right-handed alpha
Helix 27	AC9	A	683	700	Right-handed alpha
Helix 28	AD1	A	723	731	Right-handed alpha
Helix 29	AD2	A	733	743	Right-handed alpha
Helix 30	AD3	A	768	771	Right-handed 310
Helix 31	AD4	A	774	780	Right-handed 310
Helix 32	AD5	A	791	794	Right-handed 310
Helix 33	AD6	A	827	840	Right-handed alpha
Helix 34	AD7	A	851	860	Right-handed alpha
Helix 35	AD8	A	862	884	Right-handed alpha
Helix 36	AD9	A	887	894	Right-handed alpha
Helix 37	AE1	A	895	911	Right-handed alpha
Helix 38	AE2	A	915	946	Right-handed alpha
Helix 39	AE3	A	949	982	Right-handed alpha
Helix 40	AE4	A	986	1022	Right-handed alpha
Helix 41	AE5	B	2	7	Right-handed alpha
Helix 42	AE6	B	8	27	Right-handed alpha
Helix 43	AE7	B	53	61	Right-handed alpha
Helix 44	AE8	B	61	70	Right-handed alpha
Helix 45	AE9	B	99	113	Right-handed alpha
Helix 46	AF1	B	119	124	Right-handed alpha
Helix 47	AF2	B	150	162	Right-handed alpha
Helix 48	AF3	B	162	167	Right-handed alpha
Helix 49	AF4	B	189	196	Right-handed alpha
Helix 50	AF5	B	199	211	Right-handed alpha
Helix 51	AF6	B	242	248	Right-handed alpha
Helix 52	AF7	B	262	265	Right-handed alpha
Helix 53	AF8	B	298	314	Right-handed alpha
Helix 54	AF9	B	315	317	Right-handed 310
Helix 55	AG1	B	329	360	Right-handed alpha
Helix 56	AG2	B	361	370	Right-handed alpha
Helix 57	AG3	B	370	387	Right-handed alpha
Helix 58	AG4	B	391	423	Right-handed alpha
Helix 59	AG5	B	426	453	Right-handed alpha
Helix 60	AG6	B	454	459	Right-handed 310
Helix 61	AG7	B	461	496	Right-handed alpha
Helix 62	AG8	B	512	534	Right-handed alpha
Helix 63	AG9	B	534	556	Right-handed alpha
Helix 64	AH1	B	580	595	Right-handed alpha
Helix 65	AH2	B	635	646	Right-handed alpha
Helix 66	AH3	B	683	698	Right-handed alpha
Helix 67	AH4	B	723	731	Right-handed alpha
Helix 68	AH5	B	733	747	Right-handed alpha
Helix 69	AH6	B	768	771	Right-handed 310
Helix 70	AH7	B	773	778	Right-handed alpha
Helix 71	AH8	B	793	795	Right-handed 310
Helix 72	AH9	B	827	841	Right-handed alpha
Helix 73	AI1	B	852	862	Right-handed alpha
Helix 74	AI2	B	863	884	Right-handed alpha
Helix 75	AI3	B	887	894	Right-handed alpha
Helix 76	AI4	B	895	911	Right-handed alpha
Helix 77	AI5	B	915	946	Right-handed alpha
Helix 78	AI6	B	949	982	Right-handed alpha
Helix 79	AI7	B	986	1007	Right-handed alpha
Helix 80	AI8	B	1010	1022	Right-handed alpha
Helix 81	AI9	C	2	7	Right-handed alpha
Helix 82	AJ1	C	8	27	Right-handed alpha
Helix 83	AJ2	C	53	61	Right-handed alpha
Helix 84	AJ3	C	61	70	Right-handed alpha
Helix 85	AJ4	C	99	113	Right-handed alpha
Helix 86	AJ5	C	119	126	Right-handed alpha
Helix 87	AJ6	C	150	162	Right-handed alpha
Helix 88	AJ7	C	162	168	Right-handed alpha
Helix 89	AJ8	C	189	196	Right-handed alpha
Helix 90	AJ9	C	199	211	Right-handed alpha
Helix 91	AK1	C	242	248	Right-handed alpha
Helix 92	AK2	C	262	265	Right-handed alpha
Helix 93	AK3	C	298	314	Right-handed alpha
Helix 94	AK4	C	315	317	Right-handed 310
Helix 95	AK5	C	329	360	Right-handed alpha
Helix 96	AK6	C	361	370	Right-handed alpha
Helix 97	AK7	C	370	387	Right-handed alpha
Helix 98	AK8	C	391	423	Right-handed alpha
Helix 99	AK9	C	426	453	Right-handed alpha
Helix 100	AL1	C	454	459	Right-handed 310
Helix 101	AL2	C	461	488	Right-handed alpha
Helix 102	AL3	C	488	496	Right-handed alpha
Helix 103	AL4	C	512	534	Right-handed alpha
Helix 104	AL5	C	534	556	Right-handed alpha
Helix 105	AL6	C	580	595	Right-handed alpha
Helix 106	AL7	C	635	646	Right-handed alpha
Helix 107	AL8	C	682	698	Right-handed alpha
Helix 108	AL9	C	723	731	Right-handed alpha
Helix 109	AM1	C	733	747	Right-handed alpha
Helix 110	AM2	C	768	771	Right-handed 310
Helix 111	AM3	C	773	778	Right-handed alpha
Helix 112	AM4	C	827	841	Right-handed alpha
Helix 113	AM5	C	852	862	Right-handed alpha
Helix 114	AM6	C	863	884	Right-handed alpha
Helix 115	AM7	C	887	894	Right-handed alpha
Helix 116	AM8	C	895	911	Right-handed alpha
Helix 117	AM9	C	915	946	Right-handed alpha
Helix 118	AN1	C	949	982	Right-handed alpha
Helix 119	AN2	C	986	1007	Right-handed alpha
Helix 120	AN3	C	1010	1022	Right-handed alpha

There are 23 sheets in PDB entry 7B8Q. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	128	130	first strand
Strand 2	A	42	48	anti-parallel
Strand 3	A	87	94	anti-parallel
Strand 4	A	75	82	anti-parallel
Strand 5	A	807	810	anti-parallel
Strand 6	A	813	820	anti-parallel
Strand 7	A	708	709	anti-parallel

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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	128	130	first strand
Strand 2	A	42	48	anti-parallel
Strand 3	A	87	94	anti-parallel
Strand 4	A	75	82	anti-parallel
Strand 5	A	807	810	anti-parallel
Strand 6	A	813	820	anti-parallel
Strand 7	A	672	678	anti-parallel
Strand 8	A	846	850	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	172	177	first strand
Strand 2	A	284	293	anti-parallel
Strand 3	A	136	143	anti-parallel
Strand 4	A	322	328	anti-parallel

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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	172	177	first strand
Strand 2	A	284	293	anti-parallel
Strand 3	A	278	281	anti-parallel
Strand 4	A	601	608	anti-parallel
Strand 5	A	619	626	anti-parallel
Strand 6	A	568	574	anti-parallel
Strand 7	A	654	658	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	266	272	first strand
Strand 2	A	182	188	anti-parallel
Strand 3	A	758	766	parallel
Strand 4	A	748	755	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	796	804	first strand
Strand 2	A	714	722	anti-parallel
Strand 3	B	234	236	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	782	783	first strand
Strand 2	A	789	790	anti-parallel

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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	127	132	first strand
Strand 2	B	42	48	anti-parallel
Strand 3	B	87	94	anti-parallel
Strand 4	B	75	83	anti-parallel
Strand 5	B	807	810	anti-parallel
Strand 6	B	813	822	anti-parallel
Strand 7	B	704	706	anti-parallel

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There are 8 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	127	132	first strand
Strand 2	B	42	48	anti-parallel
Strand 3	B	87	94	anti-parallel
Strand 4	B	75	83	anti-parallel
Strand 5	B	807	810	anti-parallel
Strand 6	B	813	822	anti-parallel
Strand 7	B	672	678	anti-parallel
Strand 8	B	846	850	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	172	177	first strand
Strand 2	B	284	293	anti-parallel
Strand 3	B	138	143	anti-parallel
Strand 4	B	322	324	anti-parallel

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There are 7 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	172	177	first strand
Strand 2	B	284	293	anti-parallel
Strand 3	B	278	281	anti-parallel
Strand 4	B	601	608	anti-parallel
Strand 5	B	619	626	anti-parallel
Strand 6	B	570	574	anti-parallel
Strand 7	B	656	658	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	266	272	first strand
Strand 2	B	182	188	anti-parallel
Strand 3	B	758	766	parallel
Strand 4	B	749	755	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	250	252	first strand
Strand 2	B	259	261	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	715	719	first strand
Strand 2	B	799	803	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	781	783	first strand
Strand 2	B	789	791	anti-parallel

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There are 7 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	127	132	first strand
Strand 2	C	42	48	anti-parallel
Strand 3	C	87	94	anti-parallel
Strand 4	C	75	83	anti-parallel
Strand 5	C	807	810	anti-parallel
Strand 6	C	813	822	anti-parallel
Strand 7	C	704	706	anti-parallel

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There are 8 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	127	132	first strand
Strand 2	C	42	48	anti-parallel
Strand 3	C	87	94	anti-parallel
Strand 4	C	75	83	anti-parallel
Strand 5	C	807	810	anti-parallel
Strand 6	C	813	822	anti-parallel
Strand 7	C	672	678	anti-parallel
Strand 8	C	846	850	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	172	177	first strand
Strand 2	C	284	293	anti-parallel
Strand 3	C	138	143	anti-parallel
Strand 4	C	322	324	anti-parallel

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There are 7 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	172	177	first strand
Strand 2	C	284	293	anti-parallel
Strand 3	C	278	281	anti-parallel
Strand 4	C	601	608	anti-parallel
Strand 5	C	619	626	anti-parallel
Strand 6	C	570	574	anti-parallel
Strand 7	C	656	658	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	266	272	first strand
Strand 2	C	182	188	anti-parallel
Strand 3	C	758	766	parallel
Strand 4	C	749	755	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	250	252	first strand
Strand 2	C	259	261	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	715	722	first strand
Strand 2	C	796	803	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	781	783	first strand
Strand 2	C	789	791	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7B8Q

Analysis of interatomic Contacts of Structural Units in PDB entry:
7B8Q