Analysis of interatomic Contacts of Structural Units in PDB entry:
7B8W

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7B8W entry

There are 4 chains in PDB entry 7B8W (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PRO 330	ARG 633
B	PRO 330	TYR 632
C	PRO 330	TYR 632
D	HIS 331	TYR 632

There are 46 helices in PDB entry 7B8W. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	335	337	Right-handed 310
Helix 2	AA2	A	374	389	Right-handed alpha
Helix 3	AA3	A	421	427	Right-handed alpha
Helix 4	AA4	A	433	454	Right-handed alpha
Helix 5	AA5	A	512	516	Right-handed 310
Helix 6	AA6	A	517	523	Right-handed alpha
Helix 7	AA7	A	529	545	Right-handed alpha
Helix 8	AA8	A	562	570	Right-handed alpha
Helix 9	AA9	A	578	587	Right-handed alpha
Helix 10	AB1	A	590	594	Right-handed 310
Helix 11	AB2	A	596	614	Right-handed alpha
Helix 12	AB3	A	618	630	Right-handed alpha
Helix 13	AB4	B	335	337	Right-handed 310
Helix 14	AB5	B	374	389	Right-handed alpha
Helix 15	AB6	B	421	427	Right-handed alpha
Helix 16	AB7	B	433	454	Right-handed alpha
Helix 17	AB8	B	512	516	Right-handed 310
Helix 18	AB9	B	517	523	Right-handed alpha
Helix 19	AC1	B	528	545	Right-handed alpha
Helix 20	AC2	B	562	570	Right-handed alpha
Helix 21	AC3	B	578	587	Right-handed alpha
Helix 22	AC4	B	596	614	Right-handed alpha
Helix 23	AC5	B	618	630	Right-handed alpha
Helix 24	AC6	C	335	337	Right-handed 310
Helix 25	AC7	C	374	389	Right-handed alpha
Helix 26	AC8	C	421	427	Right-handed alpha
Helix 27	AC9	C	433	454	Right-handed alpha
Helix 28	AD1	C	517	523	Right-handed alpha
Helix 29	AD2	C	529	545	Right-handed alpha
Helix 30	AD3	C	562	570	Right-handed alpha
Helix 31	AD4	C	578	587	Right-handed alpha
Helix 32	AD5	C	590	594	Right-handed 310
Helix 33	AD6	C	596	614	Right-handed alpha
Helix 34	AD7	C	618	630	Right-handed alpha
Helix 35	AD8	D	335	337	Right-handed 310
Helix 36	AD9	D	374	384	Right-handed alpha
Helix 37	AE1	D	384	391	Right-handed alpha
Helix 38	AE2	D	421	427	Right-handed alpha
Helix 39	AE3	D	433	454	Right-handed alpha
Helix 40	AE4	D	517	522	Right-handed alpha
Helix 41	AE5	D	529	545	Right-handed alpha
Helix 42	AE6	D	562	570	Right-handed alpha
Helix 43	AE7	D	578	587	Right-handed alpha
Helix 44	AE8	D	590	594	Right-handed 310
Helix 45	AE9	D	596	614	Right-handed alpha
Helix 46	AF1	D	618	632	Right-handed alpha

There are 13 sheets in PDB entry 7B8W. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	339	345	first strand
Strand 2	A	353	358	anti-parallel
Strand 3	A	364	369	anti-parallel
Strand 4	A	408	414	anti-parallel
Strand 5	A	399	405	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	418	420	first strand
Strand 2	A	466	469	anti-parallel
Strand 3	A	474	476	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	456	457	first strand
Strand 2	A	484	485	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	339	340	first strand
Strand 2	B	353	358	anti-parallel
Strand 3	B	344	345	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	339	340	first strand
Strand 2	B	353	358	anti-parallel
Strand 3	B	364	369	anti-parallel
Strand 4	B	408	414	anti-parallel
Strand 5	B	399	405	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	418	420	first strand
Strand 2	B	466	469	anti-parallel
Strand 3	B	474	476	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	456	457	first strand
Strand 2	B	484	485	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	339	345	first strand
Strand 2	C	353	358	anti-parallel
Strand 3	C	364	369	anti-parallel
Strand 4	C	408	414	anti-parallel
Strand 5	C	399	405	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	418	420	first strand
Strand 2	C	466	469	anti-parallel
Strand 3	C	474	476	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	456	457	first strand
Strand 2	C	484	485	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	339	344	first strand
Strand 2	D	353	358	anti-parallel
Strand 3	D	364	369	anti-parallel
Strand 4	D	408	414	anti-parallel
Strand 5	D	399	405	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	418	420	first strand
Strand 2	D	466	469	anti-parallel
Strand 3	D	474	476	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	456	457	first strand
Strand 2	D	484	485	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7B8W

Analysis of interatomic Contacts of Structural Units in PDB entry:
7B8W