Analysis of interatomic Contacts of Structural Units in PDB entry:
7B9A

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7B9A entry

There are 4 chains in PDB entry 7B9A (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	ILE 629
B	ALA 2	ILE 629
C	MET 1	ILE 629
D	MET 1	ILE 629

There are128 helices in PDB entry 7B9A. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	8	21	Right-handed alpha
Helix 2	AA2	A	25	36	Right-handed alpha
Helix 3	AA3	A	38	44	Right-handed alpha
Helix 4	AA4	A	58	62	Right-handed 310
Helix 5	AA5	A	71	107	Right-handed alpha
Helix 6	AA6	A	116	127	Right-handed alpha
Helix 7	AA7	A	134	152	Right-handed alpha
Helix 8	AA8	A	159	165	Right-handed alpha
Helix 9	AA9	A	166	177	Right-handed alpha
Helix 10	AB1	A	182	194	Right-handed alpha
Helix 11	AB2	A	201	220	Right-handed alpha
Helix 12	AB3	A	220	233	Right-handed alpha
Helix 13	AB4	A	243	247	Right-handed 310
Helix 14	AB5	A	261	272	Right-handed alpha
Helix 15	AB6	A	273	283	Right-handed alpha
Helix 16	AB7	A	294	304	Right-handed alpha
Helix 17	AB8	A	316	318	Right-handed 310
Helix 18	AB9	A	319	325	Right-handed alpha
Helix 19	AC1	A	343	350	Right-handed alpha
Helix 20	AC2	A	376	395	Right-handed alpha
Helix 21	AC3	A	416	425	Right-handed alpha
Helix 22	AC4	A	428	437	Right-handed alpha
Helix 23	AC5	A	458	471	Right-handed alpha
Helix 24	AC6	A	480	488	Right-handed alpha
Helix 25	AC7	A	492	499	Right-handed 310
Helix 26	AC8	A	500	511	Right-handed alpha
Helix 27	AC9	A	520	522	Right-handed 310
Helix 28	AD1	A	523	539	Right-handed alpha
Helix 29	AD2	A	541	545	Right-handed 310
Helix 30	AD3	A	556	569	Right-handed alpha
Helix 31	AD4	A	584	593	Right-handed alpha
Helix 32	AD5	A	594	598	Right-handed 310
Helix 33	AD6	A	608	627	Right-handed alpha
Helix 34	AD7	B	8	21	Right-handed alpha
Helix 35	AD8	B	25	35	Right-handed alpha
Helix 36	AD9	B	38	44	Right-handed alpha
Helix 37	AE1	B	71	107	Right-handed alpha
Helix 38	AE2	B	116	127	Right-handed alpha
Helix 39	AE3	B	134	152	Right-handed alpha
Helix 40	AE4	B	159	165	Right-handed alpha
Helix 41	AE5	B	166	177	Right-handed alpha
Helix 42	AE6	B	182	194	Right-handed alpha
Helix 43	AE7	B	201	220	Right-handed alpha
Helix 44	AE8	B	220	233	Right-handed alpha
Helix 45	AE9	B	243	247	Right-handed 310
Helix 46	AF1	B	261	272	Right-handed alpha
Helix 47	AF2	B	273	283	Right-handed alpha
Helix 48	AF3	B	294	304	Right-handed alpha
Helix 49	AF4	B	316	318	Right-handed 310
Helix 50	AF5	B	319	325	Right-handed alpha
Helix 51	AF6	B	342	351	Right-handed alpha
Helix 52	AF7	B	376	395	Right-handed alpha
Helix 53	AF8	B	416	424	Right-handed alpha
Helix 54	AF9	B	428	437	Right-handed alpha
Helix 55	AG1	B	458	471	Right-handed alpha
Helix 56	AG2	B	480	489	Right-handed alpha
Helix 57	AG3	B	492	499	Right-handed 310
Helix 58	AG4	B	500	511	Right-handed alpha
Helix 59	AG5	B	520	522	Right-handed 310
Helix 60	AG6	B	523	539	Right-handed alpha
Helix 61	AG7	B	556	569	Right-handed alpha
Helix 62	AG8	B	584	593	Right-handed alpha
Helix 63	AG9	B	594	598	Right-handed 310
Helix 64	AH1	B	608	628	Right-handed alpha
Helix 65	AH2	C	8	21	Right-handed alpha
Helix 66	AH3	C	25	35	Right-handed alpha
Helix 67	AH4	C	38	44	Right-handed alpha
Helix 68	AH5	C	71	107	Right-handed alpha
Helix 69	AH6	C	116	127	Right-handed alpha
Helix 70	AH7	C	134	151	Right-handed alpha
Helix 71	AH8	C	159	164	Right-handed alpha
Helix 72	AH9	C	166	177	Right-handed alpha
Helix 73	AI1	C	182	194	Right-handed alpha
Helix 74	AI2	C	201	220	Right-handed alpha
Helix 75	AI3	C	220	233	Right-handed alpha
Helix 76	AI4	C	243	247	Right-handed 310
Helix 77	AI5	C	261	272	Right-handed alpha
Helix 78	AI6	C	273	283	Right-handed alpha
Helix 79	AI7	C	294	304	Right-handed alpha
Helix 80	AI8	C	316	318	Right-handed 310
Helix 81	AI9	C	319	325	Right-handed alpha
Helix 82	AJ1	C	342	351	Right-handed alpha
Helix 83	AJ2	C	373	375	Right-handed 310
Helix 84	AJ3	C	376	395	Right-handed alpha
Helix 85	AJ4	C	416	424	Right-handed alpha
Helix 86	AJ5	C	428	437	Right-handed alpha
Helix 87	AJ6	C	458	471	Right-handed alpha
Helix 88	AJ7	C	480	489	Right-handed alpha
Helix 89	AJ8	C	492	499	Right-handed 310
Helix 90	AJ9	C	500	511	Right-handed alpha
Helix 91	AK1	C	520	522	Right-handed 310
Helix 92	AK2	C	523	539	Right-handed alpha
Helix 93	AK3	C	541	545	Right-handed 310
Helix 94	AK4	C	556	570	Right-handed alpha
Helix 95	AK5	C	584	593	Right-handed alpha
Helix 96	AK6	C	594	598	Right-handed 310
Helix 97	AK7	C	608	627	Right-handed alpha
Helix 98	AK8	D	8	21	Right-handed alpha
Helix 99	AK9	D	25	35	Right-handed alpha
Helix 100	AL1	D	38	44	Right-handed alpha
Helix 101	AL2	D	71	107	Right-handed alpha
Helix 102	AL3	D	116	127	Right-handed alpha
Helix 103	AL4	D	134	152	Right-handed alpha
Helix 104	AL5	D	159	164	Right-handed alpha
Helix 105	AL6	D	166	177	Right-handed alpha
Helix 106	AL7	D	182	194	Right-handed alpha
Helix 107	AL8	D	201	220	Right-handed alpha
Helix 108	AL9	D	220	233	Right-handed alpha
Helix 109	AM1	D	261	272	Right-handed alpha
Helix 110	AM2	D	273	282	Right-handed alpha
Helix 111	AM3	D	293	302	Right-handed alpha
Helix 112	AM4	D	316	318	Right-handed 310
Helix 113	AM5	D	319	325	Right-handed alpha
Helix 114	AM6	D	342	350	Right-handed alpha
Helix 115	AM7	D	376	394	Right-handed alpha
Helix 116	AM8	D	416	424	Right-handed alpha
Helix 117	AM9	D	428	437	Right-handed alpha
Helix 118	AN1	D	458	471	Right-handed alpha
Helix 119	AN2	D	480	488	Right-handed alpha
Helix 120	AN3	D	492	499	Right-handed 310
Helix 121	AN4	D	500	511	Right-handed alpha
Helix 122	AN5	D	520	522	Right-handed 310
Helix 123	AN6	D	523	538	Right-handed alpha
Helix 124	AN7	D	541	545	Right-handed 310
Helix 125	AN8	D	556	569	Right-handed alpha
Helix 126	AN9	D	584	593	Right-handed alpha
Helix 127	AO1	D	594	598	Right-handed 310
Helix 128	AO2	D	608	627	Right-handed alpha

There are 16 sheets in PDB entry 7B9A. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	46	47	first strand
Strand 2	A	55	56	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	238	242	first strand
Strand 2	A	409	413	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	310	313	first strand
Strand 2	A	288	293	parallel
Strand 3	A	252	258	parallel
Strand 4	A	331	334	parallel
Strand 5	A	353	356	parallel
Strand 6	A	368	369	parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	515	519	first strand
Strand 2	A	473	479	parallel
Strand 3	A	442	448	parallel
Strand 4	A	547	551	parallel
Strand 5	A	572	575	parallel
Strand 6	A	602	604	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	46	47	first strand
Strand 2	B	55	56	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	238	242	first strand
Strand 2	B	409	413	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	310	313	first strand
Strand 2	B	288	293	parallel
Strand 3	B	252	258	parallel
Strand 4	B	331	334	parallel
Strand 5	B	353	356	parallel
Strand 6	B	368	369	parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	515	519	first strand
Strand 2	B	473	479	parallel
Strand 3	B	442	448	parallel
Strand 4	B	547	551	parallel
Strand 5	B	572	575	parallel
Strand 6	B	602	604	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	46	47	first strand
Strand 2	C	55	56	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	238	242	first strand
Strand 2	C	409	413	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	310	313	first strand
Strand 2	C	288	293	parallel
Strand 3	C	252	258	parallel
Strand 4	C	331	334	parallel
Strand 5	C	353	356	parallel
Strand 6	C	368	369	parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	515	517	first strand
Strand 2	C	473	479	parallel
Strand 3	C	442	448	parallel
Strand 4	C	547	551	parallel
Strand 5	C	572	575	parallel
Strand 6	C	602	604	parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	46	47	first strand
Strand 2	D	55	56	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	238	242	first strand
Strand 2	D	409	413	anti-parallel

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There are 6 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	310	313	first strand
Strand 2	D	288	292	parallel
Strand 3	D	252	257	parallel
Strand 4	D	331	334	parallel
Strand 5	D	353	356	parallel
Strand 6	D	368	369	parallel

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There are 6 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	515	519	first strand
Strand 2	D	473	479	parallel
Strand 3	D	442	448	parallel
Strand 4	D	547	551	parallel
Strand 5	D	572	575	parallel
Strand 6	D	602	604	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7B9A

Analysis of interatomic Contacts of Structural Units in PDB entry:
7B9A