Analysis of interatomic Contacts of Structural Units in PDB entry:
7B9C

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7B9C entry

There are 4 chains in PDB entry 7B9C (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ARG -2	ALA 1198
B	SER 9	LYS 82
C	ASN 463	LEU 1304
D	ASP 7	LEU 98

There are 84 helices in PDB entry 7B9C. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	191	195	Right-handed 310
Helix 2	AA2	A	198	204	Right-handed alpha
Helix 3	AA3	A	240	244	Right-handed 310
Helix 4	AA4	A	429	432	Right-handed 310
Helix 5	AA5	A	808	826	Right-handed alpha
Helix 6	AA6	A	828	830	Right-handed 310
Helix 7	AA7	A	831	845	Right-handed alpha
Helix 8	AA8	A	848	853	Right-handed alpha
Helix 9	AA9	A	1116	1134	Right-handed alpha
Helix 10	AB1	A	1141	1147	Right-handed alpha
Helix 11	AB2	A	1158	1162	Right-handed alpha
Helix 12	AB3	A	1163	1167	Right-handed 310
Helix 13	AB4	A	1168	1178	Right-handed alpha
Helix 14	AB5	A	1182	1197	Right-handed alpha
Helix 15	AB6	B	12	18	Right-handed alpha
Helix 16	AB7	B	27	46	Right-handed alpha
Helix 17	AB8	B	46	57	Right-handed alpha
Helix 18	AB9	B	60	72	Right-handed alpha
Helix 19	AC1	C	468	470	Right-handed 310
Helix 20	AC2	C	471	476	Right-handed alpha
Helix 21	AC3	C	477	479	Right-handed 310
Helix 22	AC4	C	488	507	Right-handed alpha
Helix 23	AC5	C	508	522	Right-handed alpha
Helix 24	AC6	C	522	527	Right-handed alpha
Helix 25	AC7	C	527	540	Right-handed alpha
Helix 26	AC8	C	545	564	Right-handed alpha
Helix 27	AC9	C	565	569	Right-handed 310
Helix 28	AD1	C	570	579	Right-handed alpha
Helix 29	AD2	C	580	584	Right-handed 310
Helix 30	AD3	C	586	605	Right-handed alpha
Helix 31	AD4	C	605	614	Right-handed alpha
Helix 32	AD5	C	615	617	Right-handed 310
Helix 33	AD6	C	621	640	Right-handed alpha
Helix 34	AD7	C	640	653	Right-handed alpha
Helix 35	AD8	C	657	676	Right-handed alpha
Helix 36	AD9	C	677	681	Right-handed 310
Helix 37	AE1	C	682	691	Right-handed alpha
Helix 38	AE2	C	692	696	Right-handed 310
Helix 39	AE3	C	698	717	Right-handed alpha
Helix 40	AE4	C	721	726	Right-handed 310
Helix 41	AE5	C	727	735	Right-handed alpha
Helix 42	AE6	C	739	754	Right-handed alpha
Helix 43	AE7	C	755	757	Right-handed 310
Helix 44	AE8	C	758	777	Right-handed alpha
Helix 45	AE9	C	781	797	Right-handed alpha
Helix 46	AF1	C	802	810	Right-handed alpha
Helix 47	AF2	C	810	818	Right-handed alpha
Helix 48	AF3	C	822	825	Right-handed 310
Helix 49	AF4	C	826	845	Right-handed alpha
Helix 50	AF5	C	845	851	Right-handed alpha
Helix 51	AF6	C	852	859	Right-handed 310
Helix 52	AF7	C	861	880	Right-handed alpha
Helix 53	AF8	C	885	902	Right-handed alpha
Helix 54	AF9	C	907	922	Right-handed alpha
Helix 55	AG1	C	923	927	Right-handed 310
Helix 56	AG2	C	928	941	Right-handed alpha
Helix 57	AG3	C	944	965	Right-handed alpha
Helix 58	AG4	C	967	981	Right-handed alpha
Helix 59	AG5	C	986	1005	Right-handed alpha
Helix 60	AG6	C	1012	1021	Right-handed alpha
Helix 61	AG7	C	1022	1026	Right-handed 310
Helix 62	AG8	C	1028	1046	Right-handed alpha
Helix 63	AG9	C	1047	1050	Right-handed 310
Helix 64	AH1	C	1051	1064	Right-handed alpha
Helix 65	AH2	C	1065	1068	Right-handed 310
Helix 66	AH3	C	1070	1089	Right-handed alpha
Helix 67	AH4	C	1090	1104	Right-handed alpha
Helix 68	AH5	C	1108	1123	Right-handed alpha
Helix 69	AH6	C	1124	1127	Right-handed 310
Helix 70	AH7	C	1128	1135	Right-handed alpha
Helix 71	AH8	C	1136	1138	Right-handed 310
Helix 72	AH9	C	1141	1159	Right-handed alpha
Helix 73	AI1	C	1160	1164	Right-handed 310
Helix 74	AI2	C	1165	1178	Right-handed alpha
Helix 75	AI3	C	1181	1199	Right-handed alpha
Helix 76	AI4	C	1204	1216	Right-handed alpha
Helix 77	AI5	C	1217	1221	Right-handed 310
Helix 78	AI6	C	1223	1242	Right-handed alpha
Helix 79	AI7	C	1242	1251	Right-handed alpha
Helix 80	AI8	C	1258	1276	Right-handed alpha
Helix 81	AI9	C	1278	1283	Right-handed 310
Helix 82	AJ1	C	1297	1302	Right-handed 310
Helix 83	AJ2	D	47	55	Right-handed 310
Helix 84	AJ3	D	73	78	Right-handed alpha

There are 20 sheets in PDB entry 7B9C. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1083	1089	first strand
Strand 2	A	1098	1103	anti-parallel
Strand 3	A	1108	1113	anti-parallel
Strand 4	A	3	9	anti-parallel
Strand 5	A	1155	1157	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	16	20	first strand
Strand 2	A	29	33	anti-parallel
Strand 3	A	37	43	anti-parallel
Strand 4	A	50	57	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	64	68	first strand
Strand 2	A	77	81	anti-parallel
Strand 3	A	86	93	anti-parallel
Strand 4	A	98	106	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	120	123	first strand
Strand 2	A	129	133	anti-parallel
Strand 3	A	139	146	anti-parallel
Strand 4	A	152	154	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	120	123	first strand
Strand 2	A	129	133	anti-parallel
Strand 3	A	139	146	anti-parallel
Strand 4	A	158	159	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	165	173	first strand
Strand 2	A	181	188	anti-parallel
Strand 3	A	207	214	anti-parallel
Strand 4	A	219	227	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	232	237	first strand
Strand 2	A	248	252	anti-parallel
Strand 3	A	255	259	anti-parallel
Strand 4	A	267	270	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	273	274	first strand
Strand 2	A	386	387	parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	287	294	first strand
Strand 2	A	299	305	anti-parallel
Strand 3	A	309	318	anti-parallel
Strand 4	A	321	332	anti-parallel
Strand 5	A	373	374	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	336	342	first strand
Strand 2	A	346	351	anti-parallel
Strand 3	A	356	361	anti-parallel
Strand 4	A	395	401	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	407	413	first strand
Strand 2	A	422	427	anti-parallel
Strand 3	A	434	439	anti-parallel
Strand 4	A	775	780	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	784	790	first strand
Strand 2	A	797	804	anti-parallel
Strand 3	A	862	869	anti-parallel
Strand 4	A	876	881	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	886	894	first strand
Strand 2	A	903	911	anti-parallel
Strand 3	A	922	931	anti-parallel
Strand 4	A	936	945	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	953	955	first strand
Strand 2	A	958	963	anti-parallel
Strand 3	A	966	972	anti-parallel
Strand 4	A	977	983	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	990	996	first strand
Strand 2	A	999	1004	anti-parallel
Strand 3	A	1009	1015	anti-parallel
Strand 4	A	1020	1026	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1033	1038	first strand
Strand 2	A	1043	1048	anti-parallel
Strand 3	A	1052	1057	anti-parallel
Strand 4	A	1072	1078	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	8	10	first strand
Strand 2	D	88	90	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	18	19	first strand
Strand 2	D	44	45	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	21	22	first strand
Strand 2	D	67	68	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	39	42	first strand
Strand 2	D	70	72	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7B9C

Analysis of interatomic Contacts of Structural Units in PDB entry:
7B9C