Analysis of interatomic Contacts of Structural Units in PDB entry:
7B9Q

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7B9Q entry

There are 2 chains in PDB entry 7B9Q (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	PRO 920
B	LYS 2	ALA 444

There are 67 helices in PDB entry 7B9Q. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	48	59	Right-handed alpha
Helix 2	AA2	A	78	82	Right-handed 310
Helix 3	AA3	A	87	92	Right-handed alpha
Helix 4	AA4	A	93	94	Right-handed 310
Helix 5	AA5	A	95	98	Right-handed 310
Helix 6	AA6	A	105	124	Right-handed alpha
Helix 7	AA7	A	129	146	Right-handed alpha
Helix 8	AA8	A	152	159	Right-handed alpha
Helix 9	AA9	A	160	166	Right-handed alpha
Helix 10	AB1	A	213	228	Right-handed alpha
Helix 11	AB2	A	253	268	Right-handed alpha
Helix 12	AB3	A	269	273	Right-handed 310
Helix 13	AB4	A	289	295	Right-handed alpha
Helix 14	AB5	A	295	327	Right-handed alpha
Helix 15	AB6	A	341	353	Right-handed alpha
Helix 16	AB7	A	358	370	Right-handed alpha
Helix 17	AB8	A	386	392	Right-handed alpha
Helix 18	AB9	A	404	413	Right-handed alpha
Helix 19	AC1	A	433	448	Right-handed alpha
Helix 20	AC2	A	455	460	Right-handed alpha
Helix 21	AC3	A	464	468	Right-handed 310
Helix 22	AC4	A	504	526	Right-handed alpha
Helix 23	AC5	A	530	541	Right-handed alpha
Helix 24	AC6	A	549	557	Right-handed alpha
Helix 25	AC7	A	563	593	Right-handed alpha
Helix 26	AC8	A	598	600	Right-handed 310
Helix 27	AC9	A	601	617	Right-handed alpha
Helix 28	AD1	A	640	662	Right-handed alpha
Helix 29	AD2	A	676	681	Right-handed alpha
Helix 30	AD3	A	711	721	Right-handed alpha
Helix 31	AD4	A	723	736	Right-handed alpha
Helix 32	AD5	A	759	764	Right-handed alpha
Helix 33	AD6	A	765	768	Right-handed 310
Helix 34	AD7	A	820	825	Right-handed alpha
Helix 35	AD8	A	837	845	Right-handed 310
Helix 36	AD9	A	859	872	Right-handed alpha
Helix 37	AE1	A	889	903	Right-handed alpha
Helix 38	AE2	B	12	16	Right-handed 310
Helix 39	AE3	B	48	58	Right-handed alpha
Helix 40	AE4	B	105	124	Right-handed alpha
Helix 41	AE5	B	129	146	Right-handed alpha
Helix 42	AE6	B	152	159	Right-handed alpha
Helix 43	AE7	B	160	165	Right-handed alpha
Helix 44	AE8	B	213	228	Right-handed alpha
Helix 45	AE9	B	253	268	Right-handed alpha
Helix 46	AF1	B	289	295	Right-handed alpha
Helix 47	AF2	B	295	328	Right-handed alpha
Helix 48	AF3	B	343	352	Right-handed alpha
Helix 49	AF4	B	357	370	Right-handed alpha
Helix 50	AF5	B	386	392	Right-handed alpha
Helix 51	AF6	B	433	447	Right-handed alpha
Helix 52	AF7	B	455	460	Right-handed alpha
Helix 53	AF8	B	464	468	Right-handed 310
Helix 54	AF9	B	495	498	Right-handed 310
Helix 55	AG1	B	504	526	Right-handed alpha
Helix 56	AG2	B	530	541	Right-handed alpha
Helix 57	AG3	B	549	558	Right-handed alpha
Helix 58	AG4	B	563	593	Right-handed alpha
Helix 59	AG5	B	598	600	Right-handed 310
Helix 60	AG6	B	601	617	Right-handed alpha
Helix 61	AG7	B	643	662	Right-handed alpha
Helix 62	AG8	B	711	720	Right-handed alpha
Helix 63	AG9	B	724	736	Right-handed alpha
Helix 64	AH1	B	818	825	Right-handed alpha
Helix 65	AH2	B	837	845	Right-handed 310
Helix 66	AH3	B	859	872	Right-handed alpha
Helix 67	AH4	B	889	903	Right-handed alpha

There are 18 sheets in PDB entry 7B9Q. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	20	27	first strand
Strand 2	A	36	44	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	65	66	first strand
Strand 2	A	100	101	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	69	72	first strand
Strand 2	A	83	86	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	149	151	first strand
Strand 2	A	485	493	anti-parallel
Strand 3	A	543	548	parallel

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There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	149	151	first strand
Strand 2	A	485	493	anti-parallel
Strand 3	A	199	201	anti-parallel
Strand 4	A	230	234	parallel
Strand 5	A	279	284	parallel
Strand 6	A	398	403	parallel
Strand 7	A	451	454	parallel
Strand 8	A	907	908	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	175	177	first strand
Strand 2	A	184	186	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	416	420	first strand
Strand 2	A	427	432	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	498	499	first strand
Strand 2	A	502	503	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	695	699	first strand
Strand 2	A	705	709	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	882	884	first strand
Strand 2	A	910	912	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	20	22	first strand
Strand 2	B	42	44	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	149	151	first strand
Strand 2	B	489	493	anti-parallel
Strand 3	B	544	548	parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	175	177	first strand
Strand 2	B	184	186	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	199	201	first strand
Strand 2	B	485	487	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	231	234	first strand
Strand 2	B	279	284	parallel
Strand 3	B	398	403	parallel
Strand 4	B	451	454	parallel
Strand 5	B	907	908	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	416	420	first strand
Strand 2	B	427	432	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	695	698	first strand
Strand 2	B	706	709	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	882	884	first strand
Strand 2	B	910	912	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7B9Q

Analysis of interatomic Contacts of Structural Units in PDB entry:
7B9Q