Analysis of interatomic Contacts of Structural Units in PDB entry:
7BAG

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7BAG entry

There are 2 chains in PDB entry 7BAG (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 1	GLN 642
B	SER 727	LYS 1359

There are 36 helices in PDB entry 7BAG. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	263	266	Right-handed 310
Helix 2	AA2	A	281	288	Right-handed alpha
Helix 3	AA3	A	293	298	Right-handed 310
Helix 4	AA4	A	410	414	Right-handed 310
Helix 5	AA5	A	426	430	Right-handed 310
Helix 6	AA6	A	461	465	Right-handed 310
Helix 7	AA7	A	500	504	Right-handed 310
Helix 8	AA8	A	578	584	Right-handed alpha
Helix 9	AA9	A	590	601	Right-handed alpha
Helix 10	AB1	A	612	620	Right-handed alpha
Helix 11	AB2	B	735	739	Right-handed 310
Helix 12	AB3	B	974	982	Right-handed 310
Helix 13	AB4	B	990	1009	Right-handed alpha
Helix 14	AB5	B	1011	1016	Right-handed alpha
Helix 15	AB6	B	1018	1035	Right-handed alpha
Helix 16	AB7	B	1036	1038	Right-handed 310
Helix 17	AB8	B	1053	1067	Right-handed alpha
Helix 18	AB9	B	1074	1090	Right-handed alpha
Helix 19	AC1	B	1104	1112	Right-handed 310
Helix 20	AC2	B	1116	1137	Right-handed alpha
Helix 21	AC3	B	1142	1158	Right-handed alpha
Helix 22	AC4	B	1159	1161	Right-handed 310
Helix 23	AC5	B	1163	1177	Right-handed alpha
Helix 24	AC6	B	1181	1192	Right-handed alpha
Helix 25	AC7	B	1203	1221	Right-handed alpha
Helix 26	AC8	B	1226	1238	Right-handed alpha
Helix 27	AC9	B	1246	1264	Right-handed alpha
Helix 28	AD1	B	1392	1401	Right-handed alpha
Helix 29	AD2	B	1408	1413	Right-handed alpha
Helix 30	AD3	B	1475	1479	Right-handed 310
Helix 31	AD4	B	1506	1515	Right-handed alpha
Helix 32	AD5	B	1567	1572	Right-handed 310
Helix 33	AD6	B	1592	1596	Right-handed 310
Helix 34	AD7	B	1611	1615	Right-handed 310
Helix 35	AD8	B	1617	1619	Right-handed 310
Helix 36	AD9	B	1620	1637	Right-handed alpha

There are 22 sheets in PDB entry 7BAG. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	61	66	first strand
Strand 2	A	18	25	anti-parallel
Strand 3	A	3	9	anti-parallel
Strand 4	A	622	626	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	11	13	first strand
Strand 2	A	93	102	parallel
Strand 3	A	82	90	anti-parallel
Strand 4	A	31	39	anti-parallel
Strand 5	A	46	54	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	107	112	first strand
Strand 2	A	122	130	anti-parallel
Strand 3	A	166	172	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	116	117	first strand
Strand 2	A	196	202	parallel
Strand 3	A	180	188	anti-parallel
Strand 4	A	140	146	anti-parallel
Strand 5	A	152	159	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	210	216	first strand
Strand 2	A	229	237	anti-parallel
Strand 3	A	275	280	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	221	222	first strand
Strand 2	A	316	327	parallel
Strand 3	A	301	310	anti-parallel
Strand 4	A	245	255	anti-parallel
Strand 5	A	258	261	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	221	222	first strand
Strand 2	A	316	327	parallel
Strand 3	A	301	310	anti-parallel
Strand 4	A	245	255	anti-parallel
Strand 5	A	267	271	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	332	334	first strand
Strand 2	A	348	355	anti-parallel
Strand 3	A	384	389	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	341	342	first strand
Strand 2	A	416	423	parallel
Strand 3	A	398	404	anti-parallel
Strand 4	A	366	369	anti-parallel
Strand 5	A	376	378	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	433	437	first strand
Strand 2	A	448	456	anti-parallel
Strand 3	A	492	498	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	477	485	first strand
Strand 2	A	467	474	anti-parallel
Strand 3	A	506	516	anti-parallel
Strand 4	A	522	532	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	541	545	first strand
Strand 2	A	558	566	anti-parallel
Strand 3	B	764	772	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	748	749	first strand
Strand 2	A	570	577	anti-parallel
Strand 3	B	778	788	anti-parallel
Strand 4	B	792	795	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	753	755	first strand
Strand 2	A	570	577	anti-parallel
Strand 3	B	778	788	anti-parallel
Strand 4	B	799	803	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	807	812	first strand
Strand 2	B	823	831	anti-parallel
Strand 3	B	870	880	anti-parallel
Strand 4	B	850	851	anti-parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	816	818	first strand
Strand 2	B	900	910	parallel
Strand 3	B	884	894	anti-parallel
Strand 4	B	838	844	anti-parallel
Strand 5	B	860	866	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	914	925	first strand
Strand 2	B	1317	1328	anti-parallel
Strand 3	B	955	963	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	936	937	first strand
Strand 2	B	1311	1312	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1339	1347	first strand
Strand 2	B	1361	1370	anti-parallel
Strand 3	B	1435	1443	anti-parallel
Strand 4	B	1389	1391	anti-parallel

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There are 5 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1405	1406	first strand
Strand 2	B	1421	1426	anti-parallel
Strand 3	B	1379	1384	anti-parallel
Strand 4	B	1453	1459	anti-parallel
Strand 5	B	1466	1471	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1482	1485	first strand
Strand 2	B	1488	1491	anti-parallel

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There are 7 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1589	1590	first strand
Strand 2	B	1597	1599	anti-parallel
Strand 3	B	1559	1565	parallel
Strand 4	B	1536	1548	anti-parallel
Strand 5	B	1519	1531	anti-parallel
Strand 6	B	1579	1585	anti-parallel
Strand 7	B	1605	1609	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7BAG

Analysis of interatomic Contacts of Structural Units in PDB entry:
7BAG