Analysis of interatomic Contacts of Structural Units in PDB entry:
7BB7


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7BB7 entry

There are 6 chains in PDB entry 7BB7 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 31LEU 340
C
 SER 2ASN 340
E
 ASP 11LEU 394
F
 ASN 5LYS 64
G
 GLN 23SER 150
H
 CYS 1GLY 9
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 21 helices in PDB entry 7BB7. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
33 64Right-handed alpha
Helix 2
AA2
A
73 78Right-handed alpha
Helix 3
AA3
A
79 99Right-handed alpha
Helix 4
AA4
A
113 142Right-handed alpha
Helix 5
AA5
A
159 178Right-handed alpha
Helix 6
AA6
A
206 232Right-handed alpha
Helix 7
AA7
A
264 297Right-handed alpha
Helix 8
AA8
A
306 328Right-handed alpha
Helix 9
AA9
A
330 339Right-handed alpha
Helix 10
AB1
C
3 26Right-handed alpha
Helix 11
AB2
C
30 37Right-handed alpha
Helix 12
AB3
E
15 40Right-handed alpha
Helix 13
AB4
E
234 238Right-handed 310
Helix 14
AB5
E
265 277Right-handed alpha
Helix 15
AB6
E
294 298Right-handed 310
Helix 16
AB7
E
312 318Right-handed alpha
Helix 17
AB8
E
331 351Right-handed alpha
Helix 18
AB9
E
369 391Right-handed alpha
Helix 19
AC1
F
8 22Right-handed alpha
Helix 20
AC2
F
29 45Right-handed alpha
Helix 21
AC3
G
83 87Right-handed 310
Back to top of page

There are 9 sheets in PDB entry 7BB7. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
182 184first strand
Strand 2
A
190 192anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
47 51first strand
Strand 2
C
336 339anti-parallel
Strand 3
C
327 331anti-parallel
Strand 4
C
315 320anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
71 72first strand
Strand 2
C
78 81anti-parallel
Strand 3
C
93 94anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
113 114first strand
Strand 2
C
122 123anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
148 151first strand
Strand 2
C
157 160anti-parallel
Strand 3
C
166 168anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
191 192first strand
Strand 2
C
198 200anti-parallel
Strand 3
C
210 212anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
276 277first strand
Strand 2
C
286 288anti-parallel
Strand 3
C
293 295anti-parallel
Strand 4
C
307 309anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
42 43first strand
Strand 2
E
220 221parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
40 43first strand
Strand 2
G
102 105anti-parallel
Strand 3
G
92 93anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il