Analysis of interatomic Contacts of Structural Units in PDB entry:
7BB8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7BB8 entry

There are 2 chains in PDB entry 7BB8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 28ASN 437
B
 ALA 28ASN 352
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 32 helices in PDB entry 7BB8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
141 155Right-handed alpha
Helix 2
AA2
A
155 164Right-handed alpha
Helix 3
AA3
A
186 191Right-handed alpha
Helix 4
AA4
A
199 204Right-handed 310
Helix 5
AA5
A
226 230Right-handed 310
Helix 6
AA6
A
231 234Right-handed 310
Helix 7
AA7
A
235 255Right-handed alpha
Helix 8
AA8
A
263 280Right-handed alpha
Helix 9
AA9
A
283 293Right-handed alpha
Helix 10
AB1
A
293 298Right-handed alpha
Helix 11
AB2
A
310 329Right-handed alpha
Helix 12
AB3
A
331 333Right-handed 310
Helix 13
AB4
A
334 342Right-handed alpha
Helix 14
AB5
A
345 358Right-handed alpha
Helix 15
AB6
A
363 378Right-handed alpha
Helix 16
AB7
A
389 393Right-handed 310
Helix 17
AB8
B
141 155Right-handed alpha
Helix 18
AB9
B
155 164Right-handed alpha
Helix 19
AC1
B
186 191Right-handed alpha
Helix 20
AC2
B
200 204Right-handed 310
Helix 21
AC3
B
226 230Right-handed 310
Helix 22
AC4
B
231 234Right-handed 310
Helix 23
AC5
B
235 254Right-handed alpha
Helix 24
AC6
B
263 280Right-handed alpha
Helix 25
AC7
B
283 293Right-handed alpha
Helix 26
AC8
B
293 298Right-handed alpha
Helix 27
AC9
B
310 329Right-handed alpha
Helix 28
AD1
B
331 333Right-handed 310
Helix 29
AD2
B
334 342Right-handed alpha
Helix 30
AD3
B
345 358Right-handed alpha
Helix 31
AD4
B
363 378Right-handed alpha
Helix 32
AD5
B
389 393Right-handed 310
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There are 6 sheets in PDB entry 7BB8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
399 400first strand
Strand 2
A
412 416parallel
Strand 3
A
29 34anti-parallel
Strand 4
A
431 435anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
44 45first strand
Strand 2
A
406 407anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
104 110first strand
Strand 2
A
117 127anti-parallel
Strand 3
A
131 135anti-parallel
Strand 4
A
176 181parallel
Strand 5
A
214 218parallel
Strand 6
A
196 197anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
399 400first strand
Strand 2
B
412 416parallel
Strand 3
B
29 34anti-parallel
Strand 4
B
431 437anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
44 45first strand
Strand 2
B
406 407anti-parallel
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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
104 110first strand
Strand 2
B
117 127anti-parallel
Strand 3
B
131 135anti-parallel
Strand 4
B
176 181parallel
Strand 5
B
214 218parallel
Strand 6
B
196 198anti-parallel
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