Analysis of interatomic Contacts of Structural Units in PDB entry:
7BBA


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7BBA entry

There are 4 chains in PDB entry 7BBA (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 441PRO 552
B
 THR 440PRO 552
C
 THR 440PRO 552
D
 ARG 442PRO 552
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 16 helices in PDB entry 7BBA. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
460 474Right-handed alpha
Helix 2
AA2
A
490 512Right-handed alpha
Helix 3
AA3
A
516 518Right-handed 310
Helix 4
AA4
A
536 544Right-handed alpha
Helix 5
AA5
B
460 474Right-handed alpha
Helix 6
AA6
B
490 512Right-handed alpha
Helix 7
AA7
B
516 518Right-handed 310
Helix 8
AA8
B
538 544Right-handed alpha
Helix 9
AA9
C
460 474Right-handed alpha
Helix 10
AB1
C
490 512Right-handed alpha
Helix 11
AB2
C
516 518Right-handed 310
Helix 12
AB3
C
537 544Right-handed alpha
Helix 13
AB4
D
460 474Right-handed alpha
Helix 14
AB5
D
490 512Right-handed alpha
Helix 15
AB6
D
516 518Right-handed 310
Helix 16
AB7
D
537 544Right-handed alpha
Back to top of page

There are 4 sheets in PDB entry 7BBA. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
520 524first strand
Strand 2
A
478 483parallel
Strand 3
A
546 551anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
441 442first strand
Strand 2
B
546 551anti-parallel
Strand 3
B
478 483anti-parallel
Strand 4
B
520 524parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
441 442first strand
Strand 2
C
546 551anti-parallel
Strand 3
C
478 483anti-parallel
Strand 4
C
520 524parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
520 524first strand
Strand 2
D
478 483parallel
Strand 3
D
546 551anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il