Analysis of interatomic Contacts of Structural Units in PDB entry:
7BBD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7BBD entry

There are 4 chains in PDB entry 7BBD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 SER -1GLU 158
D
 MET 1GLY 76
A
 GLY -4ASN 144
C
 GLY 0ILE 152
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 7BBD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
22 35Right-handed alpha
Helix 2
AA2
B
37 39Right-handed 310
Helix 3
AA3
B
79 90Right-handed alpha
Helix 4
AA4
B
113 120Right-handed alpha
Helix 5
AA5
B
137 139Right-handed 310
Helix 6
AA6
B
142 157Right-handed alpha
Helix 7
AA7
D
22 35Right-handed alpha
Helix 8
AA8
D
37 39Right-handed 310
Helix 9
AA9
A
10 24Right-handed alpha
Helix 10
AB1
A
103 108Right-handed alpha
Helix 11
AB2
A
114 126Right-handed alpha
Helix 12
AB3
A
128 133Right-handed alpha
Helix 13
AB4
C
5 18Right-handed alpha
Helix 14
AB5
C
88 92Right-handed 310
Helix 15
AB6
C
100 114Right-handed alpha
Helix 16
AB7
C
122 132Right-handed alpha
Helix 17
AB8
C
132 148Right-handed alpha
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There are 6 sheets in PDB entry 7BBD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
12 17first strand
Strand 2
B
1 7anti-parallel
Strand 3
B
66 71parallel
Strand 4
B
41 45anti-parallel
Strand 5
B
48 49anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
110 112first strand
Strand 2
B
102 104anti-parallel
Strand 3
B
140 141anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
124 126first strand
Strand 2
B
133 135anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
12 16first strand
Strand 2
D
2 6anti-parallel
Strand 3
D
65 71parallel
Strand 4
D
41 45anti-parallel
Strand 5
D
48 49anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
31 35first strand
Strand 2
A
45 51anti-parallel
Strand 3
A
62 68anti-parallel
Strand 4
A
79 82anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
23 28first strand
Strand 2
C
31 40anti-parallel
Strand 3
C
51 57anti-parallel
Strand 4
C
68 71anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il