Analysis of interatomic Contacts of Structural Units in PDB entry:
7BBR


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7BBR entry

There is 1 chain in PDB entry 7BBR (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 9ALA 318
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 7BBR. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
26 43Right-handed alpha
Helix 2
AA2
A
59 70Right-handed alpha
Helix 3
AA3
A
79 83Right-handed alpha
Helix 4
AA4
A
84 85Right-handed 310
Helix 5
AA5
A
86 94Right-handed 310
Helix 6
AA6
A
100 110Right-handed alpha
Helix 7
AA7
A
110 118Right-handed alpha
Helix 8
AA8
A
119 123Right-handed 310
Helix 9
AA9
A
147 152Right-handed 310
Helix 10
AB1
A
161 171Right-handed alpha
Helix 11
AB2
A
179 181Right-handed 310
Helix 12
AB3
A
182 189Right-handed alpha
Helix 13
AB4
A
198 205Right-handed alpha
Helix 14
AB5
A
206 211Right-handed 310
Helix 15
AB6
A
230 236Right-handed alpha
Helix 16
AB7
A
237 273Right-handed alpha
Helix 17
AB8
A
281 304Right-handed alpha
Helix 18
AB9
A
304 318Right-handed alpha
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There are 4 sheets in PDB entry 7BBR. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
14 19first strand
Strand 2
A
47 52parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
74 78first strand
Strand 2
A
221 229anti-parallel
Strand 3
A
125 135anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
194 197first strand
Strand 2
A
137 140anti-parallel
Strand 3
A
213 215anti-parallel
Strand 4
A
276 278parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
155 158first strand
Strand 2
A
174 177parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il