Analysis of interatomic Contacts of Structural Units in PDB entry:
7BCM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7BCM entry

There are 2 chains in PDB entry 7BCM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 604ALA 909
B
 ASP 604ASN 911
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 28 helices in PDB entry 7BCM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
606 610Right-handed 310
Helix 2
AA2
A
662 678Right-handed alpha
Helix 3
AA3
A
708 715Right-handed alpha
Helix 4
AA4
A
739 759Right-handed alpha
Helix 5
AA5
A
768 770Right-handed 310
Helix 6
AA6
A
776 778Right-handed 310
Helix 7
AA7
A
789 796Right-handed 310
Helix 8
AA8
A
806 810Right-handed 310
Helix 9
AA9
A
811 818Right-handed alpha
Helix 10
AB1
A
821 838Right-handed alpha
Helix 11
AB2
A
849 863Right-handed alpha
Helix 12
AB3
A
877 888Right-handed alpha
Helix 13
AB4
A
891 895Right-handed 310
Helix 14
AB5
A
897 906Right-handed alpha
Helix 15
AB6
B
606 610Right-handed 310
Helix 16
AB7
B
662 678Right-handed alpha
Helix 17
AB8
B
708 715Right-handed alpha
Helix 18
AB9
B
739 759Right-handed alpha
Helix 19
AC1
B
768 770Right-handed 310
Helix 20
AC2
B
776 778Right-handed 310
Helix 21
AC3
B
789 796Right-handed 310
Helix 22
AC4
B
806 810Right-handed 310
Helix 23
AC5
B
811 818Right-handed alpha
Helix 24
AC6
B
821 838Right-handed alpha
Helix 25
AC7
B
849 863Right-handed alpha
Helix 26
AC8
B
877 888Right-handed alpha
Helix 27
AC9
B
891 895Right-handed 310
Helix 28
AD1
B
897 910Right-handed alpha
Back to top of page

There are 6 sheets in PDB entry 7BCM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
611 616first strand
Strand 2
A
623 629anti-parallel
Strand 3
A
650 657anti-parallel
Strand 4
A
697 702anti-parallel
Strand 5
A
687 691anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
717 718first strand
Strand 2
A
737 738parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
772 774first strand
Strand 2
A
780 782anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
611 615first strand
Strand 2
B
624 628anti-parallel
Strand 3
B
652 656anti-parallel
Strand 4
B
698 702anti-parallel
Strand 5
B
687 691anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
717 718first strand
Strand 2
B
737 738parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
772 774first strand
Strand 2
B
780 782anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il