Analysis of interatomic Contacts of Structural Units in PDB entry:
7BDW


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7BDW entry

There are 2 chains in PDB entry 7BDW (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 4LEU 221
B
 PRO 2071MET 2145
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 7BDW. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
7 11Right-handed 310
Helix 2
AA2
A
31 33Right-handed 310
Helix 3
AA3
A
34 39Right-handed alpha
Helix 4
AA4
A
42 63Right-handed alpha
Helix 5
AA5
A
121 127Right-handed alpha
Helix 6
AA6
A
128 138Right-handed alpha
Helix 7
AA7
A
143 160Right-handed alpha
Helix 8
AA8
A
161 163Right-handed 310
Helix 9
AA9
A
168 170Right-handed 310
Helix 10
AB1
B
2072 2087Right-handed alpha
Helix 11
AB2
B
2097 2102Right-handed 310
Helix 12
AB3
B
2104 2120Right-handed alpha
Helix 13
AB4
B
2126 2131Right-handed alpha
Helix 14
AB5
B
2133 2143Right-handed alpha
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There are 3 sheets in PDB entry 7BDW. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
18 21first strand
Strand 2
A
94 101anti-parallel
Strand 3
A
84 91anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
71 72first strand
Strand 2
A
78 79anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
108 114first strand
Strand 2
A
211 217anti-parallel
Strand 3
A
200 208anti-parallel
Strand 4
A
181 186anti-parallel
Strand 5
A
172 177anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il