Analysis of interatomic Contacts of Structural Units in PDB entry:
7BFI

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7BFI entry

There are 5 chains in PDB entry 7BFI (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 35	LYS 413
F	PRO 1	PRO 14
C	LEU 36	GLY 411
D	LEU 36	ASP 412
B	LEU 36	GLU 187

There are 45 helices in PDB entry 7BFI. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	37	61	Right-handed alpha
Helix 2	AA2	A	70	85	Right-handed alpha
Helix 3	AA3	A	86	97	Right-handed alpha
Helix 4	AA4	A	103	122	Right-handed alpha
Helix 5	AA5	A	143	155	Right-handed alpha
Helix 6	AA6	A	165	182	Right-handed alpha
Helix 7	AA7	A	261	263	Right-handed 310
Helix 8	AA8	A	278	285	Right-handed alpha
Helix 9	AA9	A	286	297	Right-handed alpha
Helix 10	AB1	A	317	325	Right-handed alpha
Helix 11	AB2	A	337	342	Right-handed alpha
Helix 12	AB3	C	37	61	Right-handed alpha
Helix 13	AB4	C	70	85	Right-handed alpha
Helix 14	AB5	C	86	97	Right-handed alpha
Helix 15	AB6	C	103	121	Right-handed alpha
Helix 16	AB7	C	143	155	Right-handed alpha
Helix 17	AB8	C	165	181	Right-handed alpha
Helix 18	AB9	C	261	263	Right-handed 310
Helix 19	AC1	C	278	285	Right-handed alpha
Helix 20	AC2	C	286	297	Right-handed alpha
Helix 21	AC3	C	317	325	Right-handed alpha
Helix 22	AC4	C	337	342	Right-handed alpha
Helix 23	AC5	C	367	371	Right-handed 310
Helix 24	AC6	D	37	61	Right-handed alpha
Helix 25	AC7	D	70	85	Right-handed alpha
Helix 26	AC8	D	86	97	Right-handed alpha
Helix 27	AC9	D	103	122	Right-handed alpha
Helix 28	AD1	D	143	155	Right-handed alpha
Helix 29	AD2	D	165	181	Right-handed alpha
Helix 30	AD3	D	261	263	Right-handed 310
Helix 31	AD4	D	278	285	Right-handed alpha
Helix 32	AD5	D	286	296	Right-handed alpha
Helix 33	AD6	D	317	325	Right-handed alpha
Helix 34	AD7	D	337	342	Right-handed alpha
Helix 35	AD8	B	37	61	Right-handed alpha
Helix 36	AD9	B	70	85	Right-handed alpha
Helix 37	AE1	B	86	97	Right-handed alpha
Helix 38	AE2	B	103	122	Right-handed alpha
Helix 39	AE3	B	143	155	Right-handed alpha
Helix 40	AE4	B	165	182	Right-handed alpha
Helix 41	AE5	B	261	263	Right-handed 310
Helix 42	AE6	B	278	285	Right-handed alpha
Helix 43	AE7	B	286	296	Right-handed alpha
Helix 44	AE8	B	317	325	Right-handed alpha
Helix 45	AE9	B	337	342	Right-handed alpha

There are 9 sheets in PDB entry 7BFI. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	67	69	first strand
Strand 2	A	400	406	anti-parallel
Strand 3	A	388	394	anti-parallel
Strand 4	A	265	272	anti-parallel
Strand 5	A	253	259	anti-parallel
Strand 6	A	230	248	anti-parallel
Strand 7	A	298	316	anti-parallel
Strand 8	A	219	227	first strand

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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	156	161	first strand
Strand 2	A	127	137	parallel
Strand 3	A	198	207	anti-parallel
Strand 4	A	348	359	parallel
Strand 5	A	298	316	anti-parallel
Strand 6	A	230	248	anti-parallel
Strand 7	A	380	383	first strand

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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	67	69	first strand
Strand 2	C	400	406	anti-parallel
Strand 3	C	388	394	anti-parallel
Strand 4	C	265	272	anti-parallel
Strand 5	C	253	259	anti-parallel
Strand 6	C	230	248	anti-parallel
Strand 7	C	298	316	anti-parallel
Strand 8	C	219	227	first strand

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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	157	161	first strand
Strand 2	C	127	137	parallel
Strand 3	C	198	207	anti-parallel
Strand 4	C	348	359	parallel
Strand 5	C	298	316	anti-parallel
Strand 6	C	230	248	anti-parallel
Strand 7	C	380	383	first strand

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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	67	69	first strand
Strand 2	D	400	406	anti-parallel
Strand 3	D	388	394	anti-parallel
Strand 4	D	265	272	anti-parallel
Strand 5	D	253	259	anti-parallel
Strand 6	D	230	248	anti-parallel
Strand 7	D	219	227	anti-parallel

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There are 8 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	67	69	first strand
Strand 2	D	400	406	anti-parallel
Strand 3	D	388	394	anti-parallel
Strand 4	D	265	272	anti-parallel
Strand 5	D	253	259	anti-parallel
Strand 6	D	230	248	anti-parallel
Strand 7	D	298	307	anti-parallel
Strand 8	D	380	383	parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	156	161	first strand
Strand 2	D	127	137	parallel
Strand 3	D	198	207	anti-parallel
Strand 4	D	348	359	parallel
Strand 5	D	309	316	anti-parallel

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There are 8 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	67	69	first strand
Strand 2	B	400	406	anti-parallel
Strand 3	B	388	394	anti-parallel
Strand 4	B	265	272	anti-parallel
Strand 5	B	253	259	anti-parallel
Strand 6	B	230	248	anti-parallel
Strand 7	B	298	316	anti-parallel
Strand 8	B	219	227	first strand

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There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	157	161	first strand
Strand 2	B	127	137	parallel
Strand 3	B	198	207	anti-parallel
Strand 4	B	348	359	parallel
Strand 5	B	298	316	anti-parallel
Strand 6	B	230	248	anti-parallel
Strand 7	B	380	383	first strand

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7BFI

Analysis of interatomic Contacts of Structural Units in PDB entry:
7BFI