Analysis of interatomic Contacts of Structural Units in PDB entry:
7BFP

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7BFP entry

There are 4 chains in PDB entry 7BFP (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	PRO 556
C	LYS 35	SER 345
B	PRO 2	ALA 505
U	UNK 346	UNK 381

There are 52 helices in PDB entry 7BFP. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	32	38	Right-handed alpha
Helix 2	AA2	A	46	52	Right-handed alpha
Helix 3	AA3	A	92	97	Right-handed 310
Helix 4	AA4	A	109	117	Right-handed alpha
Helix 5	AA5	A	126	146	Right-handed alpha
Helix 6	AA6	A	158	165	Right-handed alpha
Helix 7	AA7	A	166	171	Right-handed alpha
Helix 8	AA8	A	183	194	Right-handed alpha
Helix 9	AA9	A	273	292	Right-handed alpha
Helix 10	AB1	A	303	320	Right-handed alpha
Helix 11	AB2	A	332	343	Right-handed alpha
Helix 12	AB3	A	381	387	Right-handed alpha
Helix 13	AB4	A	404	414	Right-handed alpha
Helix 14	AB5	A	428	434	Right-handed alpha
Helix 15	AB6	A	453	465	Right-handed alpha
Helix 16	AB7	A	473	477	Right-handed alpha
Helix 17	AB8	A	520	525	Right-handed alpha
Helix 18	AB9	C	36	45	Right-handed alpha
Helix 19	AC1	C	48	61	Right-handed alpha
Helix 20	AC2	C	65	83	Right-handed alpha
Helix 21	AC3	C	85	101	Right-handed alpha
Helix 22	AC4	C	110	120	Right-handed alpha
Helix 23	AC5	C	123	141	Right-handed alpha
Helix 24	AC6	C	143	159	Right-handed alpha
Helix 25	AC7	C	163	178	Right-handed alpha
Helix 26	AC8	C	195	205	Right-handed alpha
Helix 27	AC9	C	208	224	Right-handed alpha
Helix 28	AD1	C	230	240	Right-handed alpha
Helix 29	AD2	C	245	263	Right-handed alpha
Helix 30	AD3	C	279	292	Right-handed alpha
Helix 31	AD4	C	297	309	Right-handed alpha
Helix 32	AD5	C	313	319	Right-handed alpha
Helix 33	AD6	C	328	344	Right-handed alpha
Helix 34	AD7	B	56	61	Right-handed alpha
Helix 35	AD8	B	70	75	Right-handed alpha
Helix 36	AD9	B	78	82	Right-handed 310
Helix 37	AE1	B	93	114	Right-handed alpha
Helix 38	AE2	B	122	131	Right-handed alpha
Helix 39	AE3	B	212	230	Right-handed alpha
Helix 40	AE4	B	241	259	Right-handed alpha
Helix 41	AE5	B	271	282	Right-handed alpha
Helix 42	AE6	B	287	297	Right-handed alpha
Helix 43	AE7	B	304	312	Right-handed alpha
Helix 44	AE8	B	331	341	Right-handed alpha
Helix 45	AE9	B	357	366	Right-handed alpha
Helix 46	AF1	B	394	406	Right-handed alpha
Helix 47	AF2	B	416	431	Right-handed alpha
Helix 48	AF3	B	458	470	Right-handed alpha
Helix 49	AF4	B	494	503	Right-handed alpha
Helix 50	AF5	U	350	360	Right-handed alpha
Helix 51	AF6	U	365	367	Right-handed 310
Helix 52	AF7	U	368	381	Right-handed alpha

There are 12 sheets in PDB entry 7BFP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	98	99	first strand
Strand 2	A	22	25	parallel
Strand 3	A	15	19	anti-parallel
Strand 4	A	2	5	anti-parallel
Strand 5	A	501	504	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	68	71	first strand
Strand 2	A	74	77	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	124	125	first strand
Strand 2	A	195	196	parallel

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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	203	205	first strand
Strand 2	A	209	215	anti-parallel
Strand 3	A	223	228	anti-parallel
Strand 4	A	233	237	anti-parallel
Strand 5	A	260	263	parallel
Strand 6	A	468	472	parallel
Strand 7	A	496	497	parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	373	376	first strand
Strand 2	A	326	329	parallel
Strand 3	A	392	395	parallel
Strand 4	A	295	298	parallel
Strand 5	A	419	422	parallel
Strand 6	A	442	445	parallel

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There are 8 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	529	530	first strand
Strand 2	A	536	539	anti-parallel
Strand 3	B	482	484	anti-parallel
Strand 4	B	491	493	anti-parallel
Strand 5	B	453	457	parallel
Strand 6	A	511	516	anti-parallel
Strand 7	A	550	554	parallel
Strand 8	A	543	547	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	267	268	first strand
Strand 2	C	277	278	anti-parallel

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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	133	135	first strand
Strand 2	B	90	92	parallel
Strand 3	B	63	65	parallel
Strand 4	B	29	30	parallel
Strand 5	B	21	23	anti-parallel
Strand 6	B	3	7	anti-parallel
Strand 7	B	444	447	anti-parallel

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There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	141	143	first strand
Strand 2	B	149	151	anti-parallel
Strand 3	B	165	167	anti-parallel
Strand 4	B	172	176	anti-parallel
Strand 5	B	199	203	parallel
Strand 6	B	409	413	parallel
Strand 7	B	434	436	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	235	238	first strand
Strand 2	B	320	323	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	347	350	first strand
Strand 2	B	383	386	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	369	371	first strand
Strand 2	B	377	379	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7BFP

Analysis of interatomic Contacts of Structural Units in PDB entry:
7BFP