Analysis of interatomic Contacts of Structural Units in PDB entry:
7BGB

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7BGB entry

There are 10 chains in PDB entry 7BGB (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
K	SER 151	LEU 510
G	ASP 48	MET 392
J	MET 1	LEU 64
B	C 211	U 449
H	PRO 66	PRO 159
I	GLN 25	PRO 152
D	VAL 70	LEU 158
F	MET 1	PRO 62
E	GLN 25	PRO 152
C	PHE 36	LYS 400

There are 36 helices in PDB entry 7BGB. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	G	104	113	Right-handed alpha
Helix 2	AA2	G	139	143	Right-handed 310
Helix 3	AA3	G	166	175	Right-handed alpha
Helix 4	AA4	G	225	236	Right-handed alpha
Helix 5	AA5	G	267	277	Right-handed alpha
Helix 6	AA6	G	290	292	Right-handed 310
Helix 7	AA7	G	305	312	Right-handed alpha
Helix 8	AA8	G	353	357	Right-handed 310
Helix 9	AA9	J	41	52	Right-handed alpha
Helix 10	AB1	H	154	158	Right-handed 310
Helix 11	AB2	I	42	56	Right-handed alpha
Helix 12	AB3	I	63	71	Right-handed alpha
Helix 13	AB4	I	87	91	Right-handed 310
Helix 14	AB5	I	93	100	Right-handed alpha
Helix 15	AB6	I	111	119	Right-handed alpha
Helix 16	AB7	I	137	147	Right-handed alpha
Helix 17	AB8	D	153	158	Right-handed 310
Helix 18	AB9	F	41	52	Right-handed alpha
Helix 19	AC1	E	42	56	Right-handed alpha
Helix 20	AC2	E	63	71	Right-handed alpha
Helix 21	AC3	E	87	91	Right-handed 310
Helix 22	AC4	E	93	100	Right-handed alpha
Helix 23	AC5	E	111	119	Right-handed alpha
Helix 24	AC6	E	136	147	Right-handed alpha
Helix 25	AC7	C	58	62	Right-handed 310
Helix 26	AC8	C	82	87	Right-handed alpha
Helix 27	AC9	C	101	113	Right-handed alpha
Helix 28	AD1	C	138	142	Right-handed 310
Helix 29	AD2	C	143	148	Right-handed alpha
Helix 30	AD3	C	165	174	Right-handed alpha
Helix 31	AD4	C	226	238	Right-handed alpha
Helix 32	AD5	C	264	277	Right-handed alpha
Helix 33	AD6	C	279	286	Right-handed alpha
Helix 34	AD7	C	288	292	Right-handed 310
Helix 35	AD8	C	351	357	Right-handed alpha
Helix 36	AD9	C	383	391	Right-handed alpha

There are 22 sheets in PDB entry 7BGB. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	156	159	first strand
Strand 2	K	506	509	anti-parallel
Strand 3	K	476	479	anti-parallel
Strand 4	K	467	469	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	172	177	first strand
Strand 2	K	183	188	anti-parallel
Strand 3	K	192	197	anti-parallel
Strand 4	K	218	221	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	226	231	first strand
Strand 2	K	244	249	anti-parallel
Strand 3	K	255	258	anti-parallel
Strand 4	K	264	267	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	282	285	first strand
Strand 2	K	291	295	anti-parallel
Strand 3	K	300	304	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	328	333	first strand
Strand 2	K	340	344	anti-parallel
Strand 3	K	349	352	anti-parallel
Strand 4	K	359	363	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	373	375	first strand
Strand 2	K	382	384	anti-parallel
Strand 3	K	391	394	anti-parallel
Strand 4	K	406	408	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	419	421	first strand
Strand 2	K	428	430	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	63	64	first strand
Strand 2	G	320	323	anti-parallel
Strand 3	G	297	301	anti-parallel
Strand 4	G	332	336	parallel
Strand 5	G	342	348	anti-parallel
Strand 6	G	364	369	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	118	120	first strand
Strand 2	G	130	137	anti-parallel
Strand 3	G	89	96	anti-parallel
Strand 4	G	287	288	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	219	221	first strand
Strand 2	G	150	152	anti-parallel
Strand 3	G	250	251	anti-parallel
Strand 4	G	254	255	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	204	208	first strand
Strand 2	G	213	216	anti-parallel
Strand 3	G	155	158	anti-parallel
Strand 4	G	243	246	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	180	182	first strand
Strand 2	G	195	197	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	13	16	first strand
Strand 2	J	4	7	anti-parallel
Strand 3	J	28	29	anti-parallel

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There are 7 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	71	79	first strand
Strand 2	H	84	88	anti-parallel
Strand 3	H	124	129	anti-parallel
Strand 4	H	109	117	anti-parallel
Strand 5	H	101	103	anti-parallel
Strand 6	H	144	146	anti-parallel
Strand 7	H	71	79	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	95	96	first strand
Strand 2	H	151	152	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	60	62	first strand
Strand 2	I	126	129	anti-parallel
Strand 3	I	78	81	anti-parallel
Strand 4	I	105	107	parallel

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There are 7 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	71	80	first strand
Strand 2	D	83	88	anti-parallel
Strand 3	D	124	129	anti-parallel
Strand 4	D	109	117	anti-parallel
Strand 5	D	101	103	anti-parallel
Strand 6	D	143	146	anti-parallel
Strand 7	D	71	80	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	13	16	first strand
Strand 2	F	4	7	anti-parallel
Strand 3	F	28	29	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	60	62	first strand
Strand 2	E	126	129	anti-parallel
Strand 3	E	78	81	anti-parallel
Strand 4	E	105	107	parallel

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There are 6 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	63	64	first strand
Strand 2	C	322	323	anti-parallel
Strand 3	C	298	300	anti-parallel
Strand 4	C	332	336	parallel
Strand 5	C	342	348	anti-parallel
Strand 6	C	364	369	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	91	95	first strand
Strand 2	C	129	136	anti-parallel
Strand 3	C	118	119	anti-parallel

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There are 7 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	91	95	first strand
Strand 2	C	129	136	anti-parallel
Strand 3	C	241	248	parallel
Strand 4	C	151	159	anti-parallel
Strand 5	C	213	220	anti-parallel
Strand 6	C	195	208	anti-parallel
Strand 7	C	178	182	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7BGB

Analysis of interatomic Contacts of Structural Units in PDB entry:
7BGB