Analysis of interatomic Contacts of Structural Units in PDB entry:
7BGD

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7BGD entry

There are 14 chains in PDB entry 7BGD (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	A 7	A 38
a	C 5	U 1556
b	MET 6	GLN 225
d	ARG 3	ARG 200
e	GLU 10	ASN 166
f	MET 1	GLU 96
h	THR 2	TRP 132
k	ARG 10	ARG 127
l	PRO 2	LYS 136
o	ALA 2	ARG 89
p	ALA 2	LYS 91
q	SER 2	ILE 87
r	GLY 9	GLU 78
t	ASN 3	ASN 82

There are 42 helices in PDB entry 7BGD. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	b	27	29	Right-handed 310
Helix 2	AA2	b	43	60	Right-handed alpha
Helix 3	AA3	b	61	63	Right-handed 310
Helix 4	AA4	b	77	82	Right-handed alpha
Helix 5	AA5	b	206	223	Right-handed alpha
Helix 6	AA6	d	9	14	Right-handed alpha
Helix 7	AA7	d	45	62	Right-handed alpha
Helix 8	AA8	d	64	74	Right-handed alpha
Helix 9	AA9	d	81	91	Right-handed alpha
Helix 10	AB1	d	93	101	Right-handed alpha
Helix 11	AB2	d	106	116	Right-handed alpha
Helix 12	AB3	d	142	146	Right-handed 310
Helix 13	AB4	d	148	157	Right-handed alpha
Helix 14	AB5	d	191	196	Right-handed alpha
Helix 15	AB6	e	55	68	Right-handed alpha
Helix 16	AB7	e	109	116	Right-handed alpha
Helix 17	AB8	e	132	146	Right-handed alpha
Helix 18	AB9	e	149	157	Right-handed alpha
Helix 19	AC1	f	15	30	Right-handed alpha
Helix 20	AC2	f	72	83	Right-handed alpha
Helix 21	AC3	h	5	20	Right-handed alpha
Helix 22	AC4	h	30	43	Right-handed alpha
Helix 23	AC5	h	96	101	Right-handed 310
Helix 24	AC6	h	114	121	Right-handed alpha
Helix 25	AC7	k	46	51	Right-handed 310
Helix 26	AC8	k	53	57	Right-handed 310
Helix 27	AC9	k	59	78	Right-handed alpha
Helix 28	AD1	k	92	103	Right-handed alpha
Helix 29	AD2	l	3	8	Right-handed alpha
Helix 30	AD3	o	4	12	Right-handed alpha
Helix 31	AD4	o	24	46	Right-handed alpha
Helix 32	AD5	o	50	74	Right-handed alpha
Helix 33	AD6	o	74	86	Right-handed alpha
Helix 34	AD7	p	55	63	Right-handed alpha
Helix 35	AD8	p	68	78	Right-handed alpha
Helix 36	AD9	p	79	89	Right-handed alpha
Helix 37	AE1	r	30	35	Right-handed alpha
Helix 38	AE2	r	46	51	Right-handed alpha
Helix 39	AE3	r	53	70	Right-handed alpha
Helix 40	AE4	t	8	38	Right-handed alpha
Helix 41	AE5	t	45	63	Right-handed alpha
Helix 42	AE6	t	74	79	Right-handed alpha

There are 14 sheets in PDB entry 7BGD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	b	31	35	first strand
Strand 2	b	38	41	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	b	90	91	first strand
Strand 2	b	68	70	parallel
Strand 3	b	162	163	parallel
Strand 4	b	184	187	parallel
Strand 5	b	198	201	parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	d	124	126	first strand
Strand 2	d	119	121	anti-parallel
Strand 3	d	138	140	anti-parallel
Strand 4	d	173	176	anti-parallel
Strand 5	d	165	168	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	e	14	24	first strand
Strand 2	e	29	40	anti-parallel
Strand 3	e	46	53	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	e	85	87	first strand
Strand 2	e	94	98	anti-parallel
Strand 3	e	123	127	anti-parallel
Strand 4	e	105	106	parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	f	36	40	first strand
Strand 2	f	57	66	anti-parallel
Strand 3	f	44	47	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	f	36	40	first strand
Strand 2	f	57	66	anti-parallel
Strand 3	f	4	10	anti-parallel
Strand 4	f	86	93	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	h	24	26	first strand
Strand 2	h	61	64	anti-parallel
Strand 3	h	46	50	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	h	76	79	first strand
Strand 2	h	125	132	anti-parallel
Strand 3	h	88	89	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	h	76	79	first strand
Strand 2	h	125	132	anti-parallel
Strand 3	h	103	108	anti-parallel
Strand 4	h	111	113	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	k	41	45	first strand
Strand 2	k	30	35	anti-parallel
Strand 3	k	18	25	anti-parallel
Strand 4	k	81	87	parallel
Strand 5	k	106	110	parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	l	92	95	first strand
Strand 2	l	43	50	anti-parallel
Strand 3	l	65	70	anti-parallel
Strand 4	l	75	79	anti-parallel
Strand 5	l	108	109	parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	p	5	11	first strand
Strand 2	p	16	22	anti-parallel
Strand 3	p	35	41	anti-parallel
Strand 4	p	49	51	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	q	41	48	first strand
Strand 2	q	22	30	anti-parallel
Strand 3	q	9	19	anti-parallel
Strand 4	q	60	65	anti-parallel
Strand 5	q	75	82	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7BGD

Analysis of interatomic Contacts of Structural Units in PDB entry:
7BGD