Analysis of interatomic Contacts of Structural Units in PDB entry:
7BGM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7BGM entry

There are 2 chains in PDB entry 7BGM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 46PHE 264
B
 SER 46SER 265
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 7BGM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
47 55Right-handed alpha
Helix 2
AA2
A
83 94Right-handed alpha
Helix 3
AA3
A
155 159Right-handed 310
Helix 4
AA4
A
171 186Right-handed alpha
Helix 5
AA5
A
196 202Right-handed alpha
Helix 6
AA6
A
203 224Right-handed alpha
Helix 7
AA7
A
227 250Right-handed alpha
Helix 8
AA8
A
252 264Right-handed alpha
Helix 9
AA9
B
47 54Right-handed alpha
Helix 10
AB1
B
83 94Right-handed alpha
Helix 11
AB2
B
154 159Right-handed alpha
Helix 12
AB3
B
171 185Right-handed alpha
Helix 13
AB4
B
195 202Right-handed alpha
Helix 14
AB5
B
203 224Right-handed alpha
Helix 15
AB6
B
227 249Right-handed alpha
Helix 16
AB7
B
252 264Right-handed alpha
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There are 4 sheets in PDB entry 7BGM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
76 82first strand
Strand 2
A
64 70anti-parallel
Strand 3
A
130 137parallel
Strand 4
A
117 125anti-parallel
Strand 5
B
150 153anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
97 100first strand
Strand 2
A
105 108anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
150 153first strand
Strand 2
B
117 125anti-parallel
Strand 3
B
130 137anti-parallel
Strand 4
B
64 70parallel
Strand 5
B
76 82anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
97 100first strand
Strand 2
B
105 108anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il