Analysis of interatomic Contacts of Structural Units in PDB entry:
7BIF

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7BIF entry

There are 4 chains in PDB entry 7BIF (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 0	SER 285
B	ASP 0	SER 285
C	ASP 0	SER 285
D	ASP 0	SER 285

There are no helices in PDB entry 7BIF

There are 28 sheets in PDB entry 7BIF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	12	17	first strand
Strand 2	A	2	7	anti-parallel
Strand 3	A	280	284	anti-parallel
Strand 4	A	271	274	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	23	28	first strand
Strand 2	A	34	39	anti-parallel
Strand 3	A	44	48	anti-parallel
Strand 4	A	53	57	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	64	69	first strand
Strand 2	A	75	80	anti-parallel
Strand 3	A	84	89	anti-parallel
Strand 4	A	94	99	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	105	110	first strand
Strand 2	A	117	121	anti-parallel
Strand 3	A	125	129	anti-parallel
Strand 4	A	135	140	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	146	151	first strand
Strand 2	A	158	162	anti-parallel
Strand 3	A	166	170	anti-parallel
Strand 4	A	176	181	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	187	192	first strand
Strand 2	A	199	203	anti-parallel
Strand 3	A	208	211	anti-parallel
Strand 4	A	217	221	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	228	233	first strand
Strand 2	A	239	244	anti-parallel
Strand 3	A	248	253	anti-parallel
Strand 4	A	258	263	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	12	17	first strand
Strand 2	B	2	7	anti-parallel
Strand 3	B	280	284	anti-parallel
Strand 4	B	271	274	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	23	28	first strand
Strand 2	B	34	39	anti-parallel
Strand 3	B	44	48	anti-parallel
Strand 4	B	53	57	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	64	69	first strand
Strand 2	B	75	80	anti-parallel
Strand 3	B	84	89	anti-parallel
Strand 4	B	94	99	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	105	110	first strand
Strand 2	B	116	121	anti-parallel
Strand 3	B	125	130	anti-parallel
Strand 4	B	135	140	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	146	151	first strand
Strand 2	B	157	162	anti-parallel
Strand 3	B	166	171	anti-parallel
Strand 4	B	176	181	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	187	192	first strand
Strand 2	B	199	203	anti-parallel
Strand 3	B	207	211	anti-parallel
Strand 4	B	217	222	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	228	233	first strand
Strand 2	B	239	244	anti-parallel
Strand 3	B	249	253	anti-parallel
Strand 4	B	258	262	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	12	16	first strand
Strand 2	C	3	7	anti-parallel
Strand 3	C	280	284	anti-parallel
Strand 4	C	271	274	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	23	28	first strand
Strand 2	C	35	39	anti-parallel
Strand 3	C	43	47	anti-parallel
Strand 4	C	53	58	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	64	69	first strand
Strand 2	C	75	80	anti-parallel
Strand 3	C	85	89	anti-parallel
Strand 4	C	94	98	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	105	110	first strand
Strand 2	C	116	121	anti-parallel
Strand 3	C	125	130	anti-parallel
Strand 4	C	135	140	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	146	151	first strand
Strand 2	C	158	162	anti-parallel
Strand 3	C	166	170	anti-parallel
Strand 4	C	176	181	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	187	192	first strand
Strand 2	C	199	203	anti-parallel
Strand 3	C	207	211	anti-parallel
Strand 4	C	217	222	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	228	233	first strand
Strand 2	C	239	244	anti-parallel
Strand 3	C	249	253	anti-parallel
Strand 4	C	258	262	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	12	16	first strand
Strand 2	D	3	6	anti-parallel
Strand 3	D	281	284	anti-parallel
Strand 4	D	271	274	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	23	28	first strand
Strand 2	D	34	39	anti-parallel
Strand 3	D	44	48	anti-parallel
Strand 4	D	53	57	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	64	69	first strand
Strand 2	D	75	80	anti-parallel
Strand 3	D	85	89	anti-parallel
Strand 4	D	94	98	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	105	110	first strand
Strand 2	D	116	121	anti-parallel
Strand 3	D	125	130	anti-parallel
Strand 4	D	135	140	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	146	151	first strand
Strand 2	D	158	162	anti-parallel
Strand 3	D	166	170	anti-parallel
Strand 4	D	176	181	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	187	192	first strand
Strand 2	D	198	203	anti-parallel
Strand 3	D	207	212	anti-parallel
Strand 4	D	217	222	anti-parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	228	233	first strand
Strand 2	D	239	244	anti-parallel
Strand 3	D	249	253	anti-parallel
Strand 4	D	258	262	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7BIF

Analysis of interatomic Contacts of Structural Units in PDB entry:
7BIF