Analysis of interatomic Contacts of Structural Units in PDB entry:
7BIP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7BIP entry

There are 2 chains in PDB entry 7BIP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ALA 351
B
 MET 1ALA 351
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 29 helices in PDB entry 7BIP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
17 36Right-handed alpha
Helix 2
AA2
A
56 68Right-handed alpha
Helix 3
AA3
A
79 83Right-handed 310
Helix 4
AA4
A
84 99Right-handed alpha
Helix 5
AA5
A
112 120Right-handed alpha
Helix 6
AA6
A
125 143Right-handed alpha
Helix 7
AA7
A
179 189Right-handed alpha
Helix 8
AA8
A
201 219Right-handed alpha
Helix 9
AA9
A
224 226Right-handed 310
Helix 10
AB1
A
239 263Right-handed alpha
Helix 11
AB2
A
287 294Right-handed alpha
Helix 12
AB3
A
301 317Right-handed alpha
Helix 13
AB4
A
331 346Right-handed alpha
Helix 14
AB5
A
346 351Right-handed alpha
Helix 15
AB6
B
17 36Right-handed alpha
Helix 16
AB7
B
56 68Right-handed alpha
Helix 17
AB8
B
79 83Right-handed 310
Helix 18
AB9
B
84 99Right-handed alpha
Helix 19
AC1
B
112 120Right-handed alpha
Helix 20
AC2
B
122 124Right-handed 310
Helix 21
AC3
B
125 143Right-handed alpha
Helix 22
AC4
B
179 190Right-handed alpha
Helix 23
AC5
B
201 220Right-handed alpha
Helix 24
AC6
B
224 226Right-handed 310
Helix 25
AC7
B
239 262Right-handed alpha
Helix 26
AC8
B
287 294Right-handed alpha
Helix 27
AC9
B
301 317Right-handed alpha
Helix 28
AD1
B
331 346Right-handed alpha
Helix 29
AD2
B
347 351Right-handed 310
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There are 4 sheets in PDB entry 7BIP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
298 300first strand
Strand 2
A
228 236parallel
Strand 3
A
320 324parallel
Strand 4
A
2 6parallel
Strand 5
A
39 42parallel
Strand 6
A
72 78parallel
Strand 7
A
103 107parallel
Strand 8
A
171 175parallel
Strand 9
A
192 195parallel
Strand 10
A
228 236parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
146 149first strand
Strand 2
A
154 158anti-parallel
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There are 10 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
298 300first strand
Strand 2
B
228 236parallel
Strand 3
B
320 324parallel
Strand 4
B
2 6parallel
Strand 5
B
39 42parallel
Strand 6
B
72 78parallel
Strand 7
B
103 107parallel
Strand 8
B
171 175parallel
Strand 9
B
192 194parallel
Strand 10
B
228 236parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
146 149first strand
Strand 2
B
154 158anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il