Analysis of interatomic Contacts of Structural Units in PDB entry:
7BJP

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7BJP entry

There are 3 chains in PDB entry 7BJP (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PRO 10	ALA 527
B	PRO 27	ALA 527
C	ILE 12	ALA 527

There are 23 helices in PDB entry 7BJP. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	29	39	Right-handed alpha
Helix 2	2	A	46	48	Right-handed 310
Helix 3	3	A	76	78	Right-handed 310
Helix 4	4	A	80	88	Right-handed alpha
Helix 5	5	A	127	131	Right-handed 310
Helix 6	6	A	214	216	Right-handed 310
Helix 7	7	A	227	229	Right-handed 310
Helix 8	8	A	452	455	Right-handed alpha
Helix 9	9	A	501	503	Right-handed 310
Helix 10	10	B	30	40	Right-handed alpha
Helix 11	11	B	46	48	Right-handed 310
Helix 12	12	B	80	88	Right-handed alpha
Helix 13	13	B	126	131	Right-handed alpha
Helix 14	14	B	227	229	Right-handed 310
Helix 15	15	B	279	281	Right-handed 310
Helix 16	16	B	451	455	Right-handed alpha
Helix 17	17	B	501	503	Right-handed 310
Helix 18	18	C	31	39	Right-handed alpha
Helix 19	19	C	46	48	Right-handed 310
Helix 20	20	C	76	78	Right-handed 310
Helix 21	21	C	82	88	Right-handed alpha
Helix 22	22	C	127	131	Right-handed 310
Helix 23	23	C	227	229	Right-handed 310

There are 20 sheets in PDB entry 7BJP. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	71	73	first strand
Strand 2	A	167	174	anti-parallel
Strand 3	A	111	117	anti-parallel
Strand 4	A	134	138	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	145	149	first strand
Strand 2	A	96	103	anti-parallel
Strand 3	A	188	197	anti-parallel
Strand 4	A	52	60	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	242	244	first strand
Strand 2	A	427	431	anti-parallel
Strand 3	A	492	494	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	247	249	first strand
Strand 2	A	419	421	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	294	296	first strand
Strand 2	A	272	276	anti-parallel
Strand 3	A	385	393	anti-parallel
Strand 4	A	333	338	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	354	358	first strand
Strand 2	A	374	378	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	431	434	first strand
Strand 2	A	444	447	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	481	486	first strand
Strand 2	A	468	475	anti-parallel
Strand 3	A	509	517	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	145	149	first strand
Strand 2	B	96	102	anti-parallel
Strand 3	B	188	197	anti-parallel
Strand 4	B	52	60	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	135	138	first strand
Strand 2	B	111	117	anti-parallel
Strand 3	B	167	174	anti-parallel
Strand 4	B	68	73	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	272	276	first strand
Strand 2	B	385	393	anti-parallel
Strand 3	B	333	338	anti-parallel
Strand 4	B	352	357	anti-parallel
Strand 5	B	375	378	anti-parallel
Strand 6	B	291	293	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	492	494	first strand
Strand 2	B	427	433	anti-parallel
Strand 3	B	239	244	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	431	434	first strand
Strand 2	B	444	447	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	514	517	first strand
Strand 2	B	468	475	anti-parallel
Strand 3	B	481	487	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	145	149	first strand
Strand 2	C	96	100	anti-parallel
Strand 3	C	188	197	anti-parallel
Strand 4	C	52	60	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	135	138	first strand
Strand 2	C	111	117	anti-parallel
Strand 3	C	167	174	anti-parallel
Strand 4	C	68	73	anti-parallel

Back to list of sheets
Back to top of page

There are 1 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	242	244	first strand

Back to list of sheets
Back to top of page

There are 1 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	247	249	first strand

Back to list of sheets
Back to top of page

There are 6 strands in S sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	355	357	first strand
Strand 2	C	375	378	anti-parallel
Strand 3	C	291	296	anti-parallel
Strand 4	C	272	276	anti-parallel
Strand 5	C	385	393	anti-parallel
Strand 6	C	333	338	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in T sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	315	317	first strand
Strand 2	C	364	366	anti-parallel
Strand 3	C	359	361	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7BJP

Analysis of interatomic Contacts of Structural Units in PDB entry:
7BJP