Analysis of interatomic Contacts of Structural Units in PDB entry:
7BJT

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7BJT entry

There are 2 chains in PDB entry 7BJT (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 25	ASN 751
B	ALA 25	PHE 543

There are 48 helices in PDB entry 7BJT. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	34	45	Right-handed alpha
Helix 2	AA2	A	48	69	Right-handed alpha
Helix 3	AA3	A	81	105	Right-handed alpha
Helix 4	AA4	A	106	125	Right-handed alpha
Helix 5	AA5	A	144	163	Right-handed alpha
Helix 6	AA6	A	167	178	Right-handed alpha
Helix 7	AA7	A	178	186	Right-handed alpha
Helix 8	AA8	A	190	195	Right-handed alpha
Helix 9	AA9	A	198	216	Right-handed alpha
Helix 10	AB1	A	217	227	Right-handed alpha
Helix 11	AB2	A	253	260	Right-handed alpha
Helix 12	AB3	A	271	293	Right-handed alpha
Helix 13	AB4	A	294	299	Right-handed 310
Helix 14	AB5	A	300	316	Right-handed alpha
Helix 15	AB6	A	337	351	Right-handed alpha
Helix 16	AB7	A	356	365	Right-handed alpha
Helix 17	AB8	A	370	382	Right-handed alpha
Helix 18	AB9	A	426	430	Right-handed 310
Helix 19	AC1	A	461	465	Right-handed 310
Helix 20	AC2	A	467	473	Right-handed alpha
Helix 21	AC3	A	476	480	Right-handed 310
Helix 22	AC4	A	489	493	Right-handed 310
Helix 23	AC5	A	494	499	Right-handed alpha
Helix 24	AC6	A	593	595	Right-handed 310
Helix 25	AC7	B	34	45	Right-handed alpha
Helix 26	AC8	B	48	69	Right-handed alpha
Helix 27	AC9	B	81	105	Right-handed alpha
Helix 28	AD1	B	106	125	Right-handed alpha
Helix 29	AD2	B	144	163	Right-handed alpha
Helix 30	AD3	B	167	178	Right-handed alpha
Helix 31	AD4	B	178	186	Right-handed alpha
Helix 32	AD5	B	190	195	Right-handed alpha
Helix 33	AD6	B	198	216	Right-handed alpha
Helix 34	AD7	B	217	227	Right-handed alpha
Helix 35	AD8	B	253	260	Right-handed alpha
Helix 36	AD9	B	271	293	Right-handed alpha
Helix 37	AE1	B	294	299	Right-handed 310
Helix 38	AE2	B	300	316	Right-handed alpha
Helix 39	AE3	B	337	351	Right-handed alpha
Helix 40	AE4	B	356	365	Right-handed alpha
Helix 41	AE5	B	370	382	Right-handed alpha
Helix 42	AE6	B	426	430	Right-handed 310
Helix 43	AE7	B	461	465	Right-handed 310
Helix 44	AE8	B	467	473	Right-handed alpha
Helix 45	AE9	B	476	480	Right-handed 310
Helix 46	AF1	B	489	493	Right-handed 310
Helix 47	AF2	B	494	499	Right-handed alpha
Helix 48	AF3	B	593	595	Right-handed 310

There are 12 sheets in PDB entry 7BJT. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	393	396	first strand
Strand 2	A	405	411	anti-parallel
Strand 3	A	416	422	anti-parallel
Strand 4	A	436	441	anti-parallel
Strand 5	A	444	447	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	484	485	first strand
Strand 2	A	560	566	anti-parallel
Strand 3	A	651	660	anti-parallel
Strand 4	A	632	638	anti-parallel
Strand 5	A	597	603	anti-parallel
Strand 6	A	579	580	anti-parallel

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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	504	509	first strand
Strand 2	A	515	522	anti-parallel
Strand 3	A	529	538	anti-parallel
Strand 4	A	547	556	anti-parallel
Strand 5	A	663	672	anti-parallel
Strand 6	A	619	626	anti-parallel
Strand 7	A	609	616	anti-parallel
Strand 8	A	571	575	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	674	675	first strand
Strand 2	A	682	683	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	689	697	first strand
Strand 2	A	701	708	anti-parallel
Strand 3	A	714	720	anti-parallel
Strand 4	A	745	749	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	729	734	first strand
Strand 2	A	737	742	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	393	396	first strand
Strand 2	B	405	411	anti-parallel
Strand 3	B	416	422	anti-parallel
Strand 4	B	436	441	anti-parallel
Strand 5	B	444	447	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	484	485	first strand
Strand 2	B	560	566	anti-parallel
Strand 3	B	651	660	anti-parallel
Strand 4	B	632	638	anti-parallel
Strand 5	B	597	603	anti-parallel
Strand 6	B	579	580	anti-parallel

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There are 8 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	504	512	first strand
Strand 2	B	515	522	anti-parallel
Strand 3	B	529	538	anti-parallel
Strand 4	B	547	556	anti-parallel
Strand 5	B	663	672	anti-parallel
Strand 6	B	619	626	anti-parallel
Strand 7	B	609	616	anti-parallel
Strand 8	B	571	575	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	674	675	first strand
Strand 2	B	682	683	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	689	697	first strand
Strand 2	B	701	708	anti-parallel
Strand 3	B	714	720	anti-parallel
Strand 4	B	745	749	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	729	734	first strand
Strand 2	B	737	742	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7BJT

Analysis of interatomic Contacts of Structural Units in PDB entry:
7BJT