Analysis of interatomic Contacts of Structural Units in PDB entry:
7BJV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7BJV entry

There are 6 chains in PDB entry 7BJV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 205ASN 464
B
 VAL 205THR 463
C
 MET 204ASN 464
D
 ASN 286ALA 532
E
 VAL 287VAL 528
F
 ASN 286ILE 350
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 69 helices in PDB entry 7BJV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
209 218Right-handed alpha
Helix 2
AA2
A
239 241Right-handed 310
Helix 3
AA3
A
242 266Right-handed alpha
Helix 4
AA4
A
274 284Right-handed alpha
Helix 5
AA5
A
285 299Right-handed alpha
Helix 6
AA6
A
333 339Right-handed alpha
Helix 7
AA7
A
341 352Right-handed alpha
Helix 8
AA8
A
352 359Right-handed alpha
Helix 9
AA9
A
362 375Right-handed alpha
Helix 10
AB1
A
384 407Right-handed alpha
Helix 11
AB2
A
412 419Right-handed alpha
Helix 12
AB3
A
419 438Right-handed alpha
Helix 13
AB4
A
442 457Right-handed alpha
Helix 14
AB5
B
209 219Right-handed alpha
Helix 15
AB6
B
239 241Right-handed 310
Helix 16
AB7
B
242 266Right-handed alpha
Helix 17
AB8
B
274 284Right-handed alpha
Helix 18
AB9
B
285 298Right-handed alpha
Helix 19
AC1
B
299 300Right-handed 310
Helix 20
AC2
B
301 305Right-handed 310
Helix 21
AC3
B
333 339Right-handed alpha
Helix 22
AC4
B
341 352Right-handed alpha
Helix 23
AC5
B
352 359Right-handed alpha
Helix 24
AC6
B
362 375Right-handed alpha
Helix 25
AC7
B
384 407Right-handed alpha
Helix 26
AC8
B
412 419Right-handed alpha
Helix 27
AC9
B
419 438Right-handed alpha
Helix 28
AD1
B
445 457Right-handed alpha
Helix 29
AD2
C
209 219Right-handed alpha
Helix 30
AD3
C
239 241Right-handed 310
Helix 31
AD4
C
242 266Right-handed alpha
Helix 32
AD5
C
274 284Right-handed alpha
Helix 33
AD6
C
285 298Right-handed alpha
Helix 34
AD7
C
333 339Right-handed alpha
Helix 35
AD8
C
341 352Right-handed alpha
Helix 36
AD9
C
352 359Right-handed alpha
Helix 37
AE1
C
362 375Right-handed alpha
Helix 38
AE2
C
384 407Right-handed alpha
Helix 39
AE3
C
412 419Right-handed alpha
Helix 40
AE4
C
419 438Right-handed alpha
Helix 41
AE5
C
442 457Right-handed alpha
Helix 42
AE6
D
291 308Right-handed alpha
Helix 43
AE7
D
312 319Right-handed alpha
Helix 44
AE8
D
333 356Right-handed alpha
Helix 45
AE9
D
364 387Right-handed alpha
Helix 46
AF1
D
404 411Right-handed alpha
Helix 47
AF2
D
413 429Right-handed alpha
Helix 48
AF3
D
433 446Right-handed alpha
Helix 49
AF4
D
454 477Right-handed alpha
Helix 50
AF5
D
482 514Right-handed alpha
Helix 51
AF6
D
519 526Right-handed alpha
Helix 52
AF7
E
291 308Right-handed alpha
Helix 53
AF8
E
334 356Right-handed alpha
Helix 54
AF9
E
364 386Right-handed alpha
Helix 55
AG1
E
404 411Right-handed alpha
Helix 56
AG2
E
413 429Right-handed alpha
Helix 57
AG3
E
433 446Right-handed alpha
Helix 58
AG4
E
454 477Right-handed alpha
Helix 59
AG5
E
482 514Right-handed alpha
Helix 60
AG6
E
519 526Right-handed alpha
Helix 61
AG7
F
291 308Right-handed alpha
Helix 62
AG8
F
334 356Right-handed alpha
Helix 63
AG9
F
364 387Right-handed alpha
Helix 64
AH1
F
404 411Right-handed alpha
Helix 65
AH2
F
415 429Right-handed alpha
Helix 66
AH3
F
433 446Right-handed alpha
Helix 67
AH4
F
454 477Right-handed alpha
Helix 68
AH5
F
482 514Right-handed alpha
Helix 69
AH6
F
519 527Right-handed alpha
Back to top of page

There are 6 sheets in PDB entry 7BJV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
322 326first strand
Strand 2
A
329 332anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
322 326first strand
Strand 2
B
329 332anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
322 326first strand
Strand 2
C
329 332anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
388 389first strand
Strand 2
D
394 395anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
388 389first strand
Strand 2
E
394 395anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
388 389first strand
Strand 2
F
394 395anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il