Analysis of interatomic Contacts of Structural Units in PDB entry:
7BKF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7BKF entry

There is 1 chain in PDB entry 7BKF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 26HIS 306
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 7BKF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
28 41Right-handed alpha
Helix 2
AA2
A
65 74Right-handed alpha
Helix 3
AA3
A
80 83Right-handed 310
Helix 4
AA4
A
94 98Right-handed 310
Helix 5
AA5
A
122 124Right-handed 310
Helix 6
AA6
A
125 137Right-handed alpha
Helix 7
AA7
A
145 152Right-handed alpha
Helix 8
AA8
A
152 162Right-handed alpha
Helix 9
AA9
A
175 179Right-handed 310
Helix 10
AB1
A
180 200Right-handed alpha
Helix 11
AB2
A
208 212Right-handed 310
Helix 12
AB3
A
214 224Right-handed alpha
Helix 13
AB4
A
236 240Right-handed 310
Helix 14
AB5
A
242 254Right-handed alpha
Helix 15
AB6
A
265 282Right-handed alpha
Helix 16
AB7
A
288 294Right-handed alpha
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There are 5 sheets in PDB entry 7BKF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
48 50first strand
Strand 2
A
54 56anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
61 64first strand
Strand 2
A
85 89anti-parallel
Strand 3
A
303 305parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
166 168first strand
Strand 2
A
141 144parallel
Strand 3
A
112 119parallel
Strand 4
A
259 262parallel
Strand 5
A
233 234parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
166 168first strand
Strand 2
A
141 144parallel
Strand 3
A
112 119parallel
Strand 4
A
285 287parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
205 206first strand
Strand 2
A
227 228parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il