Analysis of interatomic Contacts of Structural Units in PDB entry:
7BKQ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7BKQ entry

There are 3 chains in PDB entry 7BKQ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 307LEU 1020
X
 U 1 G 15
Y
 C 1 A 15
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 7BKQ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
310 318Right-handed alpha
Helix 2
AA2
A
319 323Right-handed 310
Helix 3
AA3
A
335 355Right-handed alpha
Helix 4
AA4
A
366 377Right-handed alpha
Helix 5
AA5
A
377 383Right-handed alpha
Helix 6
AA6
A
400 407Right-handed alpha
Helix 7
AA7
A
415 427Right-handed alpha
Helix 8
AA8
A
445 449Right-handed 310
Helix 9
AA9
A
453 476Right-handed alpha
Helix 10
AB1
A
499 515Right-handed alpha
Helix 11
AB2
A
525 533Right-handed alpha
Helix 12
AB3
A
550 567Right-handed alpha
Helix 13
AB4
A
576 592Right-handed alpha
Helix 14
AB5
A
598 618Right-handed alpha
Helix 15
AB6
A
619 643Right-handed alpha
Helix 16
AB7
A
670 693Right-handed alpha
Helix 17
AB8
A
700 712Right-handed alpha
Helix 18
AB9
A
728 741Right-handed alpha
Helix 19
AC1
A
741 747Right-handed alpha
Helix 20
AC2
A
767 781Right-handed alpha
Helix 21
AC3
A
790 794Right-handed 310
Helix 22
AC4
A
843 863Right-handed alpha
Helix 23
AC5
A
865 895Right-handed alpha
Helix 24
AC6
A
1002 1006Right-handed 310
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There are 7 sheets in PDB entry 7BKQ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
328 329first strand
Strand 2
A
488 489parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
410 414first strand
Strand 2
A
360 364parallel
Strand 3
A
440 443parallel
Strand 4
A
484 485parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
723 724first strand
Strand 2
A
804 807parallel
Strand 3
A
830 833parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
751 753first strand
Strand 2
A
785 787parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
912 916first strand
Strand 2
A
904 907anti-parallel
Strand 3
A
987 989anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
921 923first strand
Strand 2
A
927 929anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
940 942first strand
Strand 2
A
959 961anti-parallel
Strand 3
A
967 973anti-parallel
Strand 4
A
978 982anti-parallel
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