Analysis of interatomic Contacts of Structural Units in PDB entry:
7BLY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7BLY entry

There is 1 chain in PDB entry 7BLY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 24ARG 239
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 7BLY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
53 65Right-handed alpha
Helix 2
AA2
A
73 80Right-handed alpha
Helix 3
AA3
A
80 90Right-handed alpha
Helix 4
AA4
A
103 107Right-handed 310
Helix 5
AA5
A
108 128Right-handed alpha
Helix 6
AA6
A
136 140Right-handed 310
Helix 7
AA7
A
142 153Right-handed alpha
Helix 8
AA8
A
164 168Right-handed 310
Helix 9
AA9
A
173 187Right-handed alpha
Helix 10
AB1
A
198 204Right-handed alpha
Helix 11
AB2
A
204 216Right-handed alpha
Helix 12
AB3
A
222 227Right-handed alpha
Helix 13
AB4
A
230 233Right-handed 310
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There are 4 sheets in PDB entry 7BLY. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
32 33first strand
Strand 2
A
155 157parallel
Strand 3
A
133 134parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
93 96first strand
Strand 2
A
69 72parallel
Strand 3
A
41 47parallel
Strand 4
A
191 195parallel
Strand 5
A
161 162parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
93 96first strand
Strand 2
A
69 72parallel
Strand 3
A
41 47parallel
Strand 4
A
219 220parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
130 131first strand
Strand 2
A
235 236anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il