Analysis of interatomic Contacts of Structural Units in PDB entry:
7BMF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7BMF entry

There are 2 chains in PDB entry 7BMF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 13GLY 456
B
 LYS 12THR 455
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 44 helices in PDB entry 7BMF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
14 34Right-handed alpha
Helix 2
AA2
A
45 61Right-handed alpha
Helix 3
AA3
A
75 84Right-handed alpha
Helix 4
AA4
A
96 98Right-handed 310
Helix 5
AA5
A
99 105Right-handed alpha
Helix 6
AA6
A
131 136Right-handed 310
Helix 7
AA7
A
144 154Right-handed alpha
Helix 8
AA8
A
160 171Right-handed alpha
Helix 9
AA9
A
180 192Right-handed alpha
Helix 10
AB1
A
210 217Right-handed alpha
Helix 11
AB2
A
229 241Right-handed alpha
Helix 12
AB3
A
247 251Right-handed 310
Helix 13
AB4
A
252 267Right-handed alpha
Helix 14
AB5
A
277 281Right-handed 310
Helix 15
AB6
A
285 299Right-handed alpha
Helix 16
AB7
A
303 311Right-handed alpha
Helix 17
AB8
A
315 341Right-handed alpha
Helix 18
AB9
A
356 360Right-handed 310
Helix 19
AC1
A
362 373Right-handed alpha
Helix 20
AC2
A
399 405Right-handed alpha
Helix 21
AC3
A
408 420Right-handed alpha
Helix 22
AC4
A
439 456Right-handed alpha
Helix 23
AC5
B
14 34Right-handed alpha
Helix 24
AC6
B
45 62Right-handed alpha
Helix 25
AC7
B
75 84Right-handed alpha
Helix 26
AC8
B
96 98Right-handed 310
Helix 27
AC9
B
99 105Right-handed alpha
Helix 28
AD1
B
131 136Right-handed 310
Helix 29
AD2
B
144 154Right-handed alpha
Helix 30
AD3
B
160 171Right-handed alpha
Helix 31
AD4
B
179 193Right-handed alpha
Helix 32
AD5
B
210 217Right-handed alpha
Helix 33
AD6
B
229 241Right-handed alpha
Helix 34
AD7
B
247 251Right-handed 310
Helix 35
AD8
B
252 267Right-handed alpha
Helix 36
AD9
B
277 281Right-handed 310
Helix 37
AE1
B
285 299Right-handed alpha
Helix 38
AE2
B
301 311Right-handed alpha
Helix 39
AE3
B
314 341Right-handed alpha
Helix 40
AE4
B
356 360Right-handed 310
Helix 41
AE5
B
362 373Right-handed alpha
Helix 42
AE6
B
399 405Right-handed alpha
Helix 43
AE7
B
408 419Right-handed alpha
Helix 44
AE8
B
439 455Right-handed alpha
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There are 6 sheets in PDB entry 7BMF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
66 70first strand
Strand 2
A
38 42parallel
Strand 3
A
89 93parallel
Strand 4
A
109 113parallel
Strand 5
A
127 130parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
196 201first strand
Strand 2
A
271 276anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
344 345first strand
Strand 2
A
350 354anti-parallel
Strand 3
A
382 388parallel
Strand 4
A
391 397anti-parallel
Strand 5
A
430 436anti-parallel
Strand 6
A
423 426anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
66 71first strand
Strand 2
B
38 43parallel
Strand 3
B
89 93parallel
Strand 4
B
109 113parallel
Strand 5
B
127 130parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
196 201first strand
Strand 2
B
271 276anti-parallel
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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
344 345first strand
Strand 2
B
350 354anti-parallel
Strand 3
B
382 388parallel
Strand 4
B
391 397anti-parallel
Strand 5
B
430 436anti-parallel
Strand 6
B
423 426anti-parallel
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