Analysis of interatomic Contacts of Structural Units in PDB entry:
7BMH


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7BMH entry

There are 4 chains in PDB entry 7BMH (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
PRO 42ALA 269
A
GLY 271ASP 288
B
PRO 42ALA 269
B
GLY 271LEU 284
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 7BMH. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
AA1
A
48 74Right-handed alpha
Helix 2
AA2
A
75 76Right-handed 310
Helix 3
AA3
A
77 80Right-handed 310
Helix 4
AA4
A
81 103Right-handed alpha
Helix 5
AA5
A
134 156Right-handed alpha
Helix 6
AA6
A
158 182Right-handed alpha
Helix 7
AA7
A
187 217Right-handed alpha
Helix 8
AA8
A
219 247Right-handed alpha
Helix 9
AA9
A
254 283Right-handed alpha
Helix 10
AB1
B
48 75Right-handed alpha
Helix 11
AB2
B
76 80Right-handed 310
Helix 12
AB3
B
81 103Right-handed alpha
Helix 13
AB4
B
134 156Right-handed alpha
Helix 14
AB5
B
158 181Right-handed alpha
Helix 15
AB6
B
187 218Right-handed alpha
Helix 16
AB7
B
219 247Right-handed alpha
Helix 17
AB8
B
254 284Right-handed alpha
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There are 2 sheets in PDB entry 7BMH. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
43 45first strand
Strand 2
A
124 132parallel
Strand 3
A
108 116anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
43 45first strand
Strand 2
B
124 132parallel
Strand 3
B
108 116anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il