Analysis of interatomic Contacts of Structural Units in PDB entry:
7BMJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7BMJ entry

There are 3 chains in PDB entry 7BMJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 330ILE 758
B
 GLY 99PHE 116
C
 PRO 331ILE 504
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 41 helices in PDB entry 7BMJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
335 340Right-handed alpha
Helix 2
AA2
A
341 354Right-handed alpha
Helix 3
AA3
A
356 371Right-handed alpha
Helix 4
AA4
A
374 393Right-handed alpha
Helix 5
AA5
A
394 410Right-handed alpha
Helix 6
AA6
A
415 434Right-handed alpha
Helix 7
AA7
A
435 450Right-handed alpha
Helix 8
AA8
A
453 467Right-handed alpha
Helix 9
AA9
A
469 484Right-handed alpha
Helix 10
AB1
A
487 501Right-handed alpha
Helix 11
AB2
A
503 518Right-handed alpha
Helix 12
AB3
A
524 538Right-handed alpha
Helix 13
AB4
A
542 553Right-handed alpha
Helix 14
AB5
A
577 582Right-handed alpha
Helix 15
AB6
A
583 593Right-handed alpha
Helix 16
AB7
A
593 608Right-handed alpha
Helix 17
AB8
A
637 644Right-handed alpha
Helix 18
AB9
A
644 652Right-handed alpha
Helix 19
AC1
A
654 659Right-handed alpha
Helix 20
AC2
A
748 755Right-handed alpha
Helix 21
AC3
C
335 341Right-handed alpha
Helix 22
AC4
C
341 355Right-handed alpha
Helix 23
AC5
C
356 371Right-handed alpha
Helix 24
AC6
C
374 393Right-handed alpha
Helix 25
AC7
C
394 410Right-handed alpha
Helix 26
AC8
C
415 434Right-handed alpha
Helix 27
AC9
C
435 450Right-handed alpha
Helix 28
AD1
C
453 467Right-handed alpha
Helix 29
AD2
C
469 484Right-handed alpha
Helix 30
AD3
C
487 501Right-handed alpha
Helix 31
AD4
C
503 518Right-handed alpha
Helix 32
AD5
C
524 538Right-handed alpha
Helix 33
AD6
C
539 541Right-handed 310
Helix 34
AD7
C
542 553Right-handed alpha
Helix 35
AD8
C
577 582Right-handed alpha
Helix 36
AD9
C
583 593Right-handed alpha
Helix 37
AE1
C
593 608Right-handed alpha
Helix 38
AE2
C
637 644Right-handed alpha
Helix 39
AE3
C
644 652Right-handed alpha
Helix 40
AE4
C
654 659Right-handed alpha
Helix 41
AE5
C
748 755Right-handed alpha
Back to top of page

There are 6 sheets in PDB entry 7BMJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
575 576first strand
Strand 2
A
716 719anti-parallel
Strand 3
A
686 694anti-parallel
Strand 4
A
735 743anti-parallel
Strand 5
A
664 670anti-parallel
Strand 6
A
625 632anti-parallel
Strand 7
A
613 614anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
575 576first strand
Strand 2
A
716 719anti-parallel
Strand 3
A
686 694anti-parallel
Strand 4
A
735 743anti-parallel
Strand 5
A
664 670anti-parallel
Strand 6
A
625 632anti-parallel
Strand 7
A
635 636anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
620 622first strand
Strand 2
A
674 679anti-parallel
Strand 3
A
725 729anti-parallel
Strand 4
A
700 704anti-parallel
Strand 5
A
707 709anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
613 614first strand
Strand 2
C
625 632anti-parallel
Strand 3
C
635 636anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
613 614first strand
Strand 2
C
625 632anti-parallel
Strand 3
C
664 670anti-parallel
Strand 4
C
735 743anti-parallel
Strand 5
C
686 694anti-parallel
Strand 6
C
716 719anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
620 622first strand
Strand 2
C
674 679anti-parallel
Strand 3
C
725 729anti-parallel
Strand 4
C
700 704anti-parallel
Strand 5
C
707 709anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il