Analysis of interatomic Contacts of Structural Units in PDB entry:
7BMM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7BMM entry

There are 3 chains in PDB entry 7BMM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1HIS 266
B
 MET 1HIS 266
C
 MET 1GLN 93
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 72 helices in PDB entry 7BMM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
2 7Right-handed 310
Helix 2
AA2
A
15 19Right-handed 310
Helix 3
AA3
A
28 54Right-handed alpha
Helix 4
AA4
A
69 77Right-handed alpha
Helix 5
AA5
A
78 81Right-handed 310
Helix 6
AA6
A
82 84Right-handed 310
Helix 7
AA7
A
95 100Right-handed alpha
Helix 8
AA8
A
104 110Right-handed alpha
Helix 9
AA9
A
123 128Right-handed 310
Helix 10
AB1
A
129 134Right-handed alpha
Helix 11
AB2
A
138 159Right-handed alpha
Helix 12
AB3
A
171 185Right-handed alpha
Helix 13
AB4
A
186 192Right-handed 310
Helix 14
AB5
A
193 195Right-handed 310
Helix 15
AB6
A
196 202Right-handed alpha
Helix 16
AB7
A
202 214Right-handed alpha
Helix 17
AB8
A
215 217Right-handed 310
Helix 18
AB9
A
230 250Right-handed alpha
Helix 19
AC1
A
259 263Right-handed 310
Helix 20
AC2
B
2 7Right-handed 310
Helix 21
AC3
B
15 19Right-handed 310
Helix 22
AC4
B
28 54Right-handed alpha
Helix 23
AC5
B
69 77Right-handed alpha
Helix 24
AC6
B
78 81Right-handed 310
Helix 25
AC7
B
82 84Right-handed 310
Helix 26
AC8
B
95 100Right-handed alpha
Helix 27
AC9
B
104 109Right-handed alpha
Helix 28
AD1
B
123 128Right-handed 310
Helix 29
AD2
B
129 134Right-handed alpha
Helix 30
AD3
B
138 159Right-handed alpha
Helix 31
AD4
B
171 185Right-handed alpha
Helix 32
AD5
B
186 192Right-handed 310
Helix 33
AD6
B
196 202Right-handed alpha
Helix 34
AD7
B
202 214Right-handed alpha
Helix 35
AD8
B
215 217Right-handed 310
Helix 36
AD9
B
230 250Right-handed alpha
Helix 37
AE1
C
2 7Right-handed 310
Helix 38
AE2
C
15 19Right-handed 310
Helix 39
AE3
C
28 54Right-handed alpha
Helix 40
AE4
C
69 77Right-handed alpha
Helix 41
AE5
C
78 81Right-handed 310
Helix 42
AE6
C
82 84Right-handed 310
Helix 43
AE7
C
95 100Right-handed alpha
Helix 44
AE8
C
104 110Right-handed alpha
Helix 45
AE9
C
123 128Right-handed 310
Helix 46
AF1
C
129 134Right-handed alpha
Helix 47
AF2
C
138 158Right-handed alpha
Helix 48
AF3
C
171 185Right-handed alpha
Helix 49
AF4
C
188 192Right-handed 310
Helix 50
AF5
C
193 202Right-handed alpha
Helix 51
AF6
C
202 214Right-handed alpha
Helix 52
AF7
C
215 217Right-handed 310
Helix 53
AF8
C
230 250Right-handed alpha
Helix 54
AF9
C
259 263Right-handed 310
Helix 55
AG1
D
2 7Right-handed 310
Helix 56
AG2
D
15 19Right-handed 310
Helix 57
AG3
D
28 54Right-handed alpha
Helix 58
AG4
D
69 77Right-handed alpha
Helix 59
AG5
D
78 81Right-handed 310
Helix 60
AG6
D
82 84Right-handed 310
Helix 61
AG7
D
95 100Right-handed alpha
Helix 62
AG8
D
104 110Right-handed alpha
Helix 63
AG9
D
123 128Right-handed 310
Helix 64
AH1
D
129 134Right-handed alpha
Helix 65
AH2
D
138 159Right-handed alpha
Helix 66
AH3
D
171 185Right-handed alpha
Helix 67
AH4
D
186 189Right-handed 310
Helix 68
AH5
D
195 202Right-handed alpha
Helix 69
AH6
D
202 214Right-handed alpha
Helix 70
AH7
D
215 217Right-handed 310
Helix 71
AH8
D
230 250Right-handed alpha
Helix 72
AH9
D
259 263Right-handed 310
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There are 4 sheets in PDB entry 7BMM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
86 90first strand
Strand 2
A
117 121parallel
Strand 3
A
57 64parallel
Strand 4
A
161 169parallel
Strand 5
A
223 227parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
86 90first strand
Strand 2
B
117 121parallel
Strand 3
B
57 64parallel
Strand 4
B
161 169parallel
Strand 5
B
223 227parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
86 90first strand
Strand 2
C
117 121parallel
Strand 3
C
57 63parallel
Strand 4
C
161 169parallel
Strand 5
C
223 227parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
86 90first strand
Strand 2
D
117 121parallel
Strand 3
D
57 63parallel
Strand 4
D
161 169parallel
Strand 5
D
223 227parallel
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