Analysis of interatomic Contacts of Structural Units in PDB entry:
7BNK


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7BNK entry

There are 2 chains in PDB entry 7BNK (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 37SER 230
B
 GLY 37GLN 229
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 7BNK. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
58 73Right-handed alpha
Helix 2
AA2
A
92 103Right-handed alpha
Helix 3
AA3
A
115 129Right-handed alpha
Helix 4
AA4
A
134 148Right-handed alpha
Helix 5
AA5
A
152 161Right-handed alpha
Helix 6
AA6
A
163 174Right-handed alpha
Helix 7
AA7
A
177 186Right-handed alpha
Helix 8
AA8
A
190 198Right-handed alpha
Helix 9
AA9
A
202 217Right-handed alpha
Helix 10
AB1
A
219 230Right-handed alpha
Helix 11
AB2
B
58 73Right-handed alpha
Helix 12
AB3
B
92 103Right-handed alpha
Helix 13
AB4
B
115 129Right-handed alpha
Helix 14
AB5
B
134 148Right-handed alpha
Helix 15
AB6
B
152 161Right-handed alpha
Helix 16
AB7
B
163 174Right-handed alpha
Helix 17
AB8
B
177 186Right-handed alpha
Helix 18
AB9
B
190 198Right-handed alpha
Helix 19
AC1
B
202 216Right-handed alpha
Helix 20
AC2
B
219 228Right-handed alpha
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There are 2 sheets in PDB entry 7BNK. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
39 42first strand
Strand 2
A
106 111anti-parallel
Strand 3
A
78 83parallel
Strand 4
A
86 91anti-parallel
Strand 5
A
46 47parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
39 42first strand
Strand 2
B
106 111anti-parallel
Strand 3
B
78 83parallel
Strand 4
B
86 91anti-parallel
Strand 5
B
46 47parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il