Analysis of interatomic Contacts of Structural Units in PDB entry:
7BNT


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7BNT entry

There are 3 chains in PDB entry 7BNT (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 188SER 258
B
 GLY 184SER 258
C
 LYS 30PHE 113
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 5 helices in PDB entry 7BNT. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
199 212Right-handed alpha
Helix 2
AA2
A
237 249Right-handed alpha
Helix 3
AA3
B
199 212Right-handed alpha
Helix 4
AA4
B
237 249Right-handed alpha
Helix 5
AA5
C
34 38Right-handed 310
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There are 2 sheets in PDB entry 7BNT. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 11 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
253 257first strand
Strand 2
A
189 194anti-parallel
Strand 3
A
228 233anti-parallel
Strand 4
A
216 222anti-parallel
Strand 5
B
216 222anti-parallel
Strand 6
B
228 233anti-parallel
Strand 7
B
189 194anti-parallel
Strand 8
B
253 258anti-parallel
Strand 9
C
74 80anti-parallel
Strand 10
C
83 89anti-parallel
Strand 11
C
95 96anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
63 70first strand
Strand 2
C
54 60anti-parallel
Strand 3
C
103 109anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il