Analysis of interatomic Contacts of Structural Units in PDB entry:
7BNX


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7BNX entry

There are 2 chains in PDB entry 7BNX (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 5MET 149
B
 LYS 5SER 150
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 7BNX. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
6 20Right-handed alpha
Helix 2
AA2
A
68 72Right-handed 310
Helix 3
AA3
A
104 109Right-handed alpha
Helix 4
AA4
A
120 125Right-handed alpha
Helix 5
AA5
A
126 128Right-handed 310
Helix 6
AA6
A
139 147Right-handed alpha
Helix 7
AA7
B
6 20Right-handed alpha
Helix 8
AA8
B
68 72Right-handed 310
Helix 9
AA9
B
104 110Right-handed alpha
Helix 10
AB1
B
120 125Right-handed alpha
Helix 11
AB2
B
126 128Right-handed 310
Helix 12
AB3
B
141 147Right-handed alpha
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There are 2 sheets in PDB entry 7BNX. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
23 26first strand
Strand 2
A
41 45anti-parallel
Strand 3
A
48 56anti-parallel
Strand 4
A
114 118parallel
Strand 5
A
133 138anti-parallel
Strand 6
A
79 83anti-parallel
Strand 7
A
74 76anti-parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
23 27first strand
Strand 2
B
40 45anti-parallel
Strand 3
B
48 56anti-parallel
Strand 4
B
114 118parallel
Strand 5
B
133 138anti-parallel
Strand 6
B
79 83anti-parallel
Strand 7
B
74 76anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il