Analysis of interatomic Contacts of Structural Units in PDB entry:
7BOB

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7BOB entry

There are 3 chains in PDB entry 7BOB (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	ASP 587
B	MET 1	ASP 587
C	MET 1	ASP 587

There are 71 helices in PDB entry 7BOB. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	29	31	Right-handed 310
Helix 2	AA2	A	32	37	Right-handed alpha
Helix 3	AA3	A	38	52	Right-handed alpha
Helix 4	AA4	A	63	67	Right-handed alpha
Helix 5	AA5	A	74	90	Right-handed alpha
Helix 6	AA6	A	123	142	Right-handed alpha
Helix 7	AA7	A	143	148	Right-handed 310
Helix 8	AA8	A	156	160	Right-handed 310
Helix 9	AA9	A	161	166	Right-handed alpha
Helix 10	AB1	A	167	184	Right-handed alpha
Helix 11	AB2	A	197	202	Right-handed alpha
Helix 12	AB3	A	244	248	Right-handed 310
Helix 13	AB4	A	257	273	Right-handed alpha
Helix 14	AB5	A	291	310	Right-handed alpha
Helix 15	AB6	A	332	338	Right-handed 310
Helix 16	AB7	A	351	365	Right-handed alpha
Helix 17	AB8	A	405	423	Right-handed alpha
Helix 18	AB9	A	453	466	Right-handed alpha
Helix 19	AC1	A	476	480	Right-handed 310
Helix 20	AC2	A	481	489	Right-handed alpha
Helix 21	AC3	A	515	519	Right-handed 310
Helix 22	AC4	A	557	565	Right-handed alpha
Helix 23	AC5	A	568	584	Right-handed alpha
Helix 24	AC6	B	29	31	Right-handed 310
Helix 25	AC7	B	32	37	Right-handed alpha
Helix 26	AC8	B	38	52	Right-handed alpha
Helix 27	AC9	B	63	67	Right-handed alpha
Helix 28	AD1	B	74	90	Right-handed alpha
Helix 29	AD2	B	123	142	Right-handed alpha
Helix 30	AD3	B	143	148	Right-handed 310
Helix 31	AD4	B	156	160	Right-handed 310
Helix 32	AD5	B	161	166	Right-handed alpha
Helix 33	AD6	B	167	186	Right-handed alpha
Helix 34	AD7	B	197	202	Right-handed alpha
Helix 35	AD8	B	244	248	Right-handed 310
Helix 36	AD9	B	257	273	Right-handed alpha
Helix 37	AE1	B	291	310	Right-handed alpha
Helix 38	AE2	B	332	338	Right-handed 310
Helix 39	AE3	B	351	366	Right-handed alpha
Helix 40	AE4	B	405	423	Right-handed alpha
Helix 41	AE5	B	453	466	Right-handed alpha
Helix 42	AE6	B	476	480	Right-handed 310
Helix 43	AE7	B	481	489	Right-handed alpha
Helix 44	AE8	B	515	519	Right-handed 310
Helix 45	AE9	B	557	564	Right-handed alpha
Helix 46	AF1	B	565	567	Right-handed 310
Helix 47	AF2	B	568	584	Right-handed alpha
Helix 48	AF3	C	29	31	Right-handed 310
Helix 49	AF4	C	32	37	Right-handed alpha
Helix 50	AF5	C	38	52	Right-handed alpha
Helix 51	AF6	C	63	67	Right-handed alpha
Helix 52	AF7	C	74	91	Right-handed alpha
Helix 53	AF8	C	123	142	Right-handed alpha
Helix 54	AF9	C	143	148	Right-handed 310
Helix 55	AG1	C	156	160	Right-handed 310
Helix 56	AG2	C	161	166	Right-handed alpha
Helix 57	AG3	C	167	184	Right-handed alpha
Helix 58	AG4	C	197	202	Right-handed alpha
Helix 59	AG5	C	244	248	Right-handed 310
Helix 60	AG6	C	257	273	Right-handed alpha
Helix 61	AG7	C	288	290	Right-handed 310
Helix 62	AG8	C	291	310	Right-handed alpha
Helix 63	AG9	C	332	338	Right-handed 310
Helix 64	AH1	C	351	365	Right-handed alpha
Helix 65	AH2	C	405	423	Right-handed alpha
Helix 66	AH3	C	453	466	Right-handed alpha
Helix 67	AH4	C	476	480	Right-handed 310
Helix 68	AH5	C	481	489	Right-handed alpha
Helix 69	AH6	C	515	519	Right-handed 310
Helix 70	AH7	C	557	565	Right-handed alpha
Helix 71	AH8	C	568	584	Right-handed alpha

There are 18 sheets in PDB entry 7BOB. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2	3	first strand
Strand 2	A	9	10	anti-parallel

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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	191	192	first strand
Strand 2	A	151	154	parallel
Strand 3	A	94	101	parallel
Strand 4	A	56	62	parallel
Strand 5	A	20	23	parallel
Strand 6	A	311	316	parallel
Strand 7	A	277	282	parallel
Strand 8	A	237	241	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	103	104	first strand
Strand 2	A	107	108	anti-parallel

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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	427	431	first strand
Strand 2	A	385	389	parallel
Strand 3	A	444	448	parallel
Strand 4	A	469	473	parallel
Strand 5	A	549	554	parallel
Strand 6	A	539	546	anti-parallel
Strand 7	A	529	533	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	490	496	first strand
Strand 2	A	520	525	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	501	505	first strand
Strand 2	A	508	512	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	2	3	first strand
Strand 2	B	9	10	anti-parallel

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There are 8 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	191	192	first strand
Strand 2	B	151	154	parallel
Strand 3	B	94	101	parallel
Strand 4	B	56	62	parallel
Strand 5	B	20	23	parallel
Strand 6	B	311	316	parallel
Strand 7	B	277	282	parallel
Strand 8	B	237	241	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	103	104	first strand
Strand 2	B	107	108	anti-parallel

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There are 7 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	427	431	first strand
Strand 2	B	385	389	parallel
Strand 3	B	444	448	parallel
Strand 4	B	469	473	parallel
Strand 5	B	549	554	parallel
Strand 6	B	539	546	anti-parallel
Strand 7	B	529	533	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	490	496	first strand
Strand 2	B	520	525	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	501	505	first strand
Strand 2	B	508	512	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	2	3	first strand
Strand 2	C	9	10	anti-parallel
Strand 3	C	16	17	anti-parallel

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There are 8 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	191	192	first strand
Strand 2	C	151	154	parallel
Strand 3	C	94	101	parallel
Strand 4	C	56	62	parallel
Strand 5	C	20	23	parallel
Strand 6	C	311	316	parallel
Strand 7	C	277	282	parallel
Strand 8	C	237	241	parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	103	104	first strand
Strand 2	C	107	108	anti-parallel

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There are 7 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	427	431	first strand
Strand 2	C	385	389	parallel
Strand 3	C	444	448	parallel
Strand 4	C	469	473	parallel
Strand 5	C	549	554	parallel
Strand 6	C	539	546	anti-parallel
Strand 7	C	529	533	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	490	496	first strand
Strand 2	C	520	525	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	501	505	first strand
Strand 2	C	508	512	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7BOB

Analysis of interatomic Contacts of Structural Units in PDB entry:
7BOB