Analysis of interatomic Contacts of Structural Units in PDB entry:
7BOX

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7BOX entry

There are 12 chains in PDB entry 7BOX (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
M	SER 3	ARG 196
N	ARG 2	ARG 196
O	SER 3	ARG 196
P	ARG 2	ARG 196
Q	SER 3	ARG 196
R	ARG 2	ARG 196
S	SER 3	ARG 196
T	ARG 2	ARG 196
U	SER 3	ARG 196
V	ARG 2	ARG 196
W	SER 3	ARG 196
X	ARG 2	ARG 196

There are 50 helices in PDB entry 7BOX. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	M	10	25	Right-handed alpha
Helix 2	AA2	M	37	55	Right-handed alpha
Helix 3	AA3	M	131	150	Right-handed alpha
Helix 4	AA4	M	153	179	Right-handed alpha
Helix 5	AA5	N	11	25	Right-handed alpha
Helix 6	AA6	N	37	55	Right-handed alpha
Helix 7	AA7	N	131	150	Right-handed alpha
Helix 8	AA8	N	153	179	Right-handed alpha
Helix 9	AA9	O	10	25	Right-handed alpha
Helix 10	AB1	O	37	55	Right-handed alpha
Helix 11	AB2	O	131	150	Right-handed alpha
Helix 12	AB3	O	153	180	Right-handed alpha
Helix 13	AB4	O	189	194	Right-handed alpha
Helix 14	AB5	P	11	25	Right-handed alpha
Helix 15	AB6	P	37	57	Right-handed alpha
Helix 16	AB7	P	131	150	Right-handed alpha
Helix 17	AB8	P	153	180	Right-handed alpha
Helix 18	AB9	Q	10	25	Right-handed alpha
Helix 19	AC1	Q	37	57	Right-handed alpha
Helix 20	AC2	Q	131	150	Right-handed alpha
Helix 21	AC3	Q	153	180	Right-handed alpha
Helix 22	AC4	R	11	25	Right-handed alpha
Helix 23	AC5	R	37	57	Right-handed alpha
Helix 24	AC6	R	131	150	Right-handed alpha
Helix 25	AC7	R	153	180	Right-handed alpha
Helix 26	AC8	S	10	25	Right-handed alpha
Helix 27	AC9	S	37	55	Right-handed alpha
Helix 28	AD1	S	131	150	Right-handed alpha
Helix 29	AD2	S	153	180	Right-handed alpha
Helix 30	AD3	T	11	25	Right-handed alpha
Helix 31	AD4	T	37	55	Right-handed alpha
Helix 32	AD5	T	131	151	Right-handed alpha
Helix 33	AD6	T	153	179	Right-handed alpha
Helix 34	AD7	U	10	25	Right-handed alpha
Helix 35	AD8	U	37	55	Right-handed alpha
Helix 36	AD9	U	131	150	Right-handed alpha
Helix 37	AE1	U	153	179	Right-handed alpha
Helix 38	AE2	V	11	25	Right-handed alpha
Helix 39	AE3	V	37	55	Right-handed alpha
Helix 40	AE4	V	131	151	Right-handed alpha
Helix 41	AE5	V	153	179	Right-handed alpha
Helix 42	AE6	W	10	25	Right-handed alpha
Helix 43	AE7	W	37	55	Right-handed alpha
Helix 44	AE8	W	131	150	Right-handed alpha
Helix 45	AE9	W	153	179	Right-handed alpha
Helix 46	AF1	W	191	195	Right-handed 310
Helix 47	AF2	X	11	25	Right-handed alpha
Helix 48	AF3	X	37	55	Right-handed alpha
Helix 49	AF4	X	131	150	Right-handed alpha
Helix 50	AF5	X	153	179	Right-handed alpha

There are 24 sheets in PDB entry 7BOX. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	63	67	first strand
Strand 2	M	119	123	anti-parallel
Strand 3	M	84	89	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	96	98	first strand
Strand 2	M	103	105	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	63	67	first strand
Strand 2	N	119	123	anti-parallel
Strand 3	N	84	89	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	96	99	first strand
Strand 2	N	102	105	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	63	67	first strand
Strand 2	O	119	123	anti-parallel
Strand 3	O	84	89	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	96	98	first strand
Strand 2	O	103	105	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	63	67	first strand
Strand 2	P	119	123	anti-parallel
Strand 3	P	84	89	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	96	99	first strand
Strand 2	P	102	105	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	63	67	first strand
Strand 2	Q	119	123	anti-parallel
Strand 3	Q	84	89	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	96	98	first strand
Strand 2	Q	103	105	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	63	67	first strand
Strand 2	R	119	123	anti-parallel
Strand 3	R	84	89	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	96	99	first strand
Strand 2	R	102	105	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	63	67	first strand
Strand 2	S	119	123	anti-parallel
Strand 3	S	84	89	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	96	98	first strand
Strand 2	S	103	105	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	T	63	67	first strand
Strand 2	T	119	123	anti-parallel
Strand 3	T	84	89	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	T	96	98	first strand
Strand 2	T	103	105	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	U	63	67	first strand
Strand 2	U	119	123	anti-parallel
Strand 3	U	84	89	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	U	96	98	first strand
Strand 2	U	103	105	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	V	63	67	first strand
Strand 2	V	119	123	anti-parallel
Strand 3	V	84	89	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	V	96	99	first strand
Strand 2	V	102	105	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	W	63	67	first strand
Strand 2	W	119	123	anti-parallel
Strand 3	W	84	89	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	W	96	98	first strand
Strand 2	W	103	105	anti-parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	X	63	67	first strand
Strand 2	X	119	123	anti-parallel
Strand 3	X	84	89	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	X	96	99	first strand
Strand 2	X	102	105	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7BOX

Analysis of interatomic Contacts of Structural Units in PDB entry:
7BOX