Analysis of interatomic Contacts of Structural Units in PDB entry:
7BPA

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7BPA entry

There are 6 chains in PDB entry 7BPA (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 18	ARG 766
B	LYS 18	ARG 766
C	LYS 18	ARG 766
D	LYS 18	ARG 766
E	LYS 18	ARG 766
F	LYS 18	ARG 766

There are211 helices in PDB entry 7BPA. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	43	49	Right-handed alpha
Helix 2	AA2	A	62	64	Right-handed 310
Helix 3	AA3	A	85	92	Right-handed alpha
Helix 4	AA4	A	130	139	Right-handed alpha
Helix 5	AA5	A	202	206	Right-handed 310
Helix 6	AA6	A	209	220	Right-handed alpha
Helix 7	AA7	A	220	226	Right-handed alpha
Helix 8	AA8	A	227	232	Right-handed 310
Helix 9	AA9	A	250	262	Right-handed alpha
Helix 10	AB1	A	271	275	Right-handed alpha
Helix 11	AB2	A	278	296	Right-handed alpha
Helix 12	AB3	A	305	310	Right-handed alpha
Helix 13	AB4	A	312	316	Right-handed 310
Helix 14	AB5	A	319	334	Right-handed alpha
Helix 15	AB6	A	349	353	Right-handed 310
Helix 16	AB7	A	373	385	Right-handed alpha
Helix 17	AB8	A	395	402	Right-handed alpha
Helix 18	AB9	A	407	426	Right-handed alpha
Helix 19	AC1	A	438	444	Right-handed alpha
Helix 20	AC2	A	448	458	Right-handed alpha
Helix 21	AC3	A	475	479	Right-handed 310
Helix 22	AC4	A	482	495	Right-handed alpha
Helix 23	AC5	A	499	506	Right-handed alpha
Helix 24	AC6	A	524	535	Right-handed alpha
Helix 25	AC7	A	543	553	Right-handed alpha
Helix 26	AC8	A	555	557	Right-handed 310
Helix 27	AC9	A	558	569	Right-handed alpha
Helix 28	AD1	A	580	586	Right-handed alpha
Helix 29	AD2	A	598	610	Right-handed alpha
Helix 30	AD3	A	630	634	Right-handed 310
Helix 31	AD4	A	649	662	Right-handed alpha
Helix 32	AD5	A	671	679	Right-handed alpha
Helix 33	AD6	A	683	713	Right-handed alpha
Helix 34	AD7	A	732	741	Right-handed alpha
Helix 35	AD8	A	748	761	Right-handed alpha
Helix 36	AD9	B	43	49	Right-handed alpha
Helix 37	AE1	B	62	64	Right-handed 310
Helix 38	AE2	B	85	92	Right-handed alpha
Helix 39	AE3	B	130	139	Right-handed alpha
Helix 40	AE4	B	202	206	Right-handed 310
Helix 41	AE5	B	209	220	Right-handed alpha
Helix 42	AE6	B	220	226	Right-handed alpha
Helix 43	AE7	B	227	232	Right-handed 310
Helix 44	AE8	B	250	262	Right-handed alpha
Helix 45	AE9	B	271	275	Right-handed alpha
Helix 46	AF1	B	278	296	Right-handed alpha
Helix 47	AF2	B	305	310	Right-handed alpha
Helix 48	AF3	B	312	316	Right-handed 310
Helix 49	AF4	B	319	334	Right-handed alpha
Helix 50	AF5	B	349	353	Right-handed 310
Helix 51	AF6	B	354	358	Right-handed 310
Helix 52	AF7	B	373	385	Right-handed alpha
Helix 53	AF8	B	395	402	Right-handed alpha
Helix 54	AF9	B	407	426	Right-handed alpha
Helix 55	AG1	B	438	444	Right-handed alpha
Helix 56	AG2	B	448	458	Right-handed alpha
Helix 57	AG3	B	475	479	Right-handed 310
Helix 58	AG4	B	482	495	Right-handed alpha
Helix 59	AG5	B	499	506	Right-handed alpha
Helix 60	AG6	B	524	535	Right-handed alpha
Helix 61	AG7	B	543	553	Right-handed alpha
Helix 62	AG8	B	555	557	Right-handed 310
Helix 63	AG9	B	558	569	Right-handed alpha
Helix 64	AH1	B	580	586	Right-handed alpha
Helix 65	AH2	B	598	610	Right-handed alpha
Helix 66	AH3	B	630	634	Right-handed 310
Helix 67	AH4	B	649	662	Right-handed alpha
Helix 68	AH5	B	671	679	Right-handed alpha
Helix 69	AH6	B	683	713	Right-handed alpha
Helix 70	AH7	B	732	741	Right-handed alpha
Helix 71	AH8	B	748	761	Right-handed alpha
Helix 72	AH9	C	43	49	Right-handed alpha
Helix 73	AI1	C	62	64	Right-handed 310
Helix 74	AI2	C	85	92	Right-handed alpha
Helix 75	AI3	C	130	139	Right-handed alpha
Helix 76	AI4	C	202	206	Right-handed 310
Helix 77	AI5	C	209	220	Right-handed alpha
Helix 78	AI6	C	220	226	Right-handed alpha
Helix 79	AI7	C	227	232	Right-handed 310
Helix 80	AI8	C	250	262	Right-handed alpha
Helix 81	AI9	C	271	275	Right-handed alpha
Helix 82	AJ1	C	278	296	Right-handed alpha
Helix 83	AJ2	C	305	310	Right-handed alpha
Helix 84	AJ3	C	312	316	Right-handed 310
Helix 85	AJ4	C	319	334	Right-handed alpha
Helix 86	AJ5	C	349	353	Right-handed 310
Helix 87	AJ6	C	373	385	Right-handed alpha
Helix 88	AJ7	C	395	402	Right-handed alpha
Helix 89	AJ8	C	407	426	Right-handed alpha
Helix 90	AJ9	C	438	444	Right-handed alpha
Helix 91	AK1	C	448	458	Right-handed alpha
Helix 92	AK2	C	475	479	Right-handed 310
Helix 93	AK3	C	482	495	Right-handed alpha
Helix 94	AK4	C	499	506	Right-handed alpha
Helix 95	AK5	C	524	535	Right-handed alpha
Helix 96	AK6	C	543	553	Right-handed alpha
Helix 97	AK7	C	555	557	Right-handed 310
Helix 98	AK8	C	558	569	Right-handed alpha
Helix 99	AK9	C	580	586	Right-handed alpha
Helix 100	AL1	C	598	610	Right-handed alpha
Helix 101	AL2	C	630	634	Right-handed 310
Helix 102	AL3	C	649	662	Right-handed alpha
Helix 103	AL4	C	671	679	Right-handed alpha
Helix 104	AL5	C	686	713	Right-handed alpha
Helix 105	AL6	C	732	741	Right-handed alpha
Helix 106	AL7	C	748	761	Right-handed alpha
Helix 107	AL8	D	43	49	Right-handed alpha
Helix 108	AL9	D	62	64	Right-handed 310
Helix 109	AM1	D	85	92	Right-handed alpha
Helix 110	AM2	D	130	139	Right-handed alpha
Helix 111	AM3	D	202	206	Right-handed 310
Helix 112	AM4	D	209	220	Right-handed alpha
Helix 113	AM5	D	220	226	Right-handed alpha
Helix 114	AM6	D	227	232	Right-handed 310
Helix 115	AM7	D	250	262	Right-handed alpha
Helix 116	AM8	D	271	275	Right-handed alpha
Helix 117	AM9	D	278	296	Right-handed alpha
Helix 118	AN1	D	305	310	Right-handed alpha
Helix 119	AN2	D	312	316	Right-handed 310
Helix 120	AN3	D	319	334	Right-handed alpha
Helix 121	AN4	D	349	353	Right-handed 310
Helix 122	AN5	D	373	385	Right-handed alpha
Helix 123	AN6	D	395	402	Right-handed alpha
Helix 124	AN7	D	407	426	Right-handed alpha
Helix 125	AN8	D	438	444	Right-handed alpha
Helix 126	AN9	D	448	458	Right-handed alpha
Helix 127	AO1	D	475	479	Right-handed 310
Helix 128	AO2	D	482	495	Right-handed alpha
Helix 129	AO3	D	499	506	Right-handed alpha
Helix 130	AO4	D	524	535	Right-handed alpha
Helix 131	AO5	D	543	553	Right-handed alpha
Helix 132	AO6	D	555	557	Right-handed 310
Helix 133	AO7	D	558	569	Right-handed alpha
Helix 134	AO8	D	580	586	Right-handed alpha
Helix 135	AO9	D	598	610	Right-handed alpha
Helix 136	AP1	D	630	634	Right-handed 310
Helix 137	AP2	D	649	662	Right-handed alpha
Helix 138	AP3	D	671	679	Right-handed alpha
Helix 139	AP4	D	683	713	Right-handed alpha
Helix 140	AP5	D	732	741	Right-handed alpha
Helix 141	AP6	D	748	761	Right-handed alpha
Helix 142	AP7	E	43	49	Right-handed alpha
Helix 143	AP8	E	62	64	Right-handed 310
Helix 144	AP9	E	85	92	Right-handed alpha
Helix 145	AQ1	E	130	139	Right-handed alpha
Helix 146	AQ2	E	202	206	Right-handed 310
Helix 147	AQ3	E	210	220	Right-handed alpha
Helix 148	AQ4	E	220	226	Right-handed alpha
Helix 149	AQ5	E	227	232	Right-handed 310
Helix 150	AQ6	E	250	262	Right-handed alpha
Helix 151	AQ7	E	271	275	Right-handed alpha
Helix 152	AQ8	E	278	296	Right-handed alpha
Helix 153	AQ9	E	305	310	Right-handed alpha
Helix 154	AR1	E	312	316	Right-handed 310
Helix 155	AR2	E	319	334	Right-handed alpha
Helix 156	AR3	E	349	353	Right-handed 310
Helix 157	AR4	E	373	385	Right-handed alpha
Helix 158	AR5	E	395	402	Right-handed alpha
Helix 159	AR6	E	407	426	Right-handed alpha
Helix 160	AR7	E	438	444	Right-handed alpha
Helix 161	AR8	E	448	458	Right-handed alpha
Helix 162	AR9	E	475	479	Right-handed 310
Helix 163	AS1	E	482	495	Right-handed alpha
Helix 164	AS2	E	499	506	Right-handed alpha
Helix 165	AS3	E	524	535	Right-handed alpha
Helix 166	AS4	E	543	553	Right-handed alpha
Helix 167	AS5	E	555	557	Right-handed 310
Helix 168	AS6	E	558	569	Right-handed alpha
Helix 169	AS7	E	580	586	Right-handed alpha
Helix 170	AS8	E	598	610	Right-handed alpha
Helix 171	AS9	E	630	634	Right-handed 310
Helix 172	AT1	E	649	662	Right-handed alpha
Helix 173	AT2	E	671	679	Right-handed alpha
Helix 174	AT3	E	683	713	Right-handed alpha
Helix 175	AT4	E	732	741	Right-handed alpha
Helix 176	AT5	E	748	761	Right-handed alpha
Helix 177	AT6	F	43	49	Right-handed alpha
Helix 178	AT7	F	62	64	Right-handed 310
Helix 179	AT8	F	85	92	Right-handed alpha
Helix 180	AT9	F	130	139	Right-handed alpha
Helix 181	AU1	F	202	206	Right-handed 310
Helix 182	AU2	F	209	220	Right-handed alpha
Helix 183	AU3	F	220	226	Right-handed alpha
Helix 184	AU4	F	227	232	Right-handed 310
Helix 185	AU5	F	250	262	Right-handed alpha
Helix 186	AU6	F	271	275	Right-handed alpha
Helix 187	AU7	F	278	296	Right-handed alpha
Helix 188	AU8	F	305	310	Right-handed alpha
Helix 189	AU9	F	312	316	Right-handed 310
Helix 190	AV1	F	319	334	Right-handed alpha
Helix 191	AV2	F	349	353	Right-handed 310
Helix 192	AV3	F	373	385	Right-handed alpha
Helix 193	AV4	F	395	402	Right-handed alpha
Helix 194	AV5	F	407	426	Right-handed alpha
Helix 195	AV6	F	438	444	Right-handed alpha
Helix 196	AV7	F	448	458	Right-handed alpha
Helix 197	AV8	F	475	479	Right-handed 310
Helix 198	AV9	F	482	495	Right-handed alpha
Helix 199	AW1	F	499	506	Right-handed alpha
Helix 200	AW2	F	524	535	Right-handed alpha
Helix 201	AW3	F	543	553	Right-handed alpha
Helix 202	AW4	F	555	557	Right-handed 310
Helix 203	AW5	F	558	569	Right-handed alpha
Helix 204	AW6	F	580	586	Right-handed alpha
Helix 205	AW7	F	598	610	Right-handed alpha
Helix 206	AW8	F	630	634	Right-handed 310
Helix 207	AW9	F	649	662	Right-handed alpha
Helix 208	AX1	F	671	679	Right-handed alpha
Helix 209	AX2	F	686	713	Right-handed alpha
Helix 210	AX3	F	732	741	Right-handed alpha
Helix 211	AX4	F	748	761	Right-handed alpha

There are 30 sheets in PDB entry 7BPA. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	26	29	first strand
Strand 2	A	81	83	parallel
Strand 3	A	38	42	anti-parallel
Strand 4	A	66	74	parallel
Strand 5	A	56	60	anti-parallel
Strand 6	A	99	104	anti-parallel
Strand 7	A	26	29	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	151	156	first strand
Strand 2	A	159	168	anti-parallel
Strand 3	A	114	118	anti-parallel
Strand 4	A	182	183	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	144	147	first strand
Strand 2	A	173	176	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	265	270	first strand
Strand 2	A	299	304	parallel
Strand 3	A	341	347	parallel
Strand 4	A	240	244	parallel
Strand 5	A	365	368	parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	538	542	first strand
Strand 2	A	572	577	parallel
Strand 3	A	617	623	parallel
Strand 4	A	513	517	parallel
Strand 5	A	642	644	parallel

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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	26	29	first strand
Strand 2	B	81	83	parallel
Strand 3	B	38	42	anti-parallel
Strand 4	B	66	74	parallel
Strand 5	B	56	60	anti-parallel
Strand 6	B	99	104	anti-parallel
Strand 7	B	26	29	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	151	156	first strand
Strand 2	B	159	168	anti-parallel
Strand 3	B	114	118	anti-parallel
Strand 4	B	182	183	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	144	147	first strand
Strand 2	B	173	176	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	265	270	first strand
Strand 2	B	299	304	parallel
Strand 3	B	341	347	parallel
Strand 4	B	240	244	parallel
Strand 5	B	365	368	parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	538	542	first strand
Strand 2	B	572	577	parallel
Strand 3	B	617	623	parallel
Strand 4	B	513	517	parallel
Strand 5	B	642	644	parallel

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There are 7 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	26	29	first strand
Strand 2	C	81	83	parallel
Strand 3	C	38	42	anti-parallel
Strand 4	C	66	74	parallel
Strand 5	C	56	60	anti-parallel
Strand 6	C	99	104	anti-parallel
Strand 7	C	26	29	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	151	156	first strand
Strand 2	C	159	168	anti-parallel
Strand 3	C	114	118	anti-parallel
Strand 4	C	182	183	parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	144	147	first strand
Strand 2	C	173	176	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	265	270	first strand
Strand 2	C	299	304	parallel
Strand 3	C	341	347	parallel
Strand 4	C	240	244	parallel
Strand 5	C	365	368	parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	538	542	first strand
Strand 2	C	572	577	parallel
Strand 3	C	617	623	parallel
Strand 4	C	513	517	parallel
Strand 5	C	642	644	parallel

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There are 7 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	26	29	first strand
Strand 2	D	81	83	parallel
Strand 3	D	38	42	anti-parallel
Strand 4	D	66	74	parallel
Strand 5	D	56	60	anti-parallel
Strand 6	D	99	104	anti-parallel
Strand 7	D	26	29	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	151	156	first strand
Strand 2	D	159	168	anti-parallel
Strand 3	D	114	118	anti-parallel
Strand 4	D	182	183	parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	144	147	first strand
Strand 2	D	173	176	anti-parallel

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There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	265	270	first strand
Strand 2	D	299	304	parallel
Strand 3	D	341	347	parallel
Strand 4	D	240	244	parallel
Strand 5	D	365	368	parallel

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There are 5 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	538	542	first strand
Strand 2	D	572	577	parallel
Strand 3	D	617	623	parallel
Strand 4	D	513	517	parallel
Strand 5	D	642	644	parallel

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There are 7 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	26	29	first strand
Strand 2	E	81	83	parallel
Strand 3	E	38	42	anti-parallel
Strand 4	E	66	74	parallel
Strand 5	E	56	60	anti-parallel
Strand 6	E	99	104	anti-parallel
Strand 7	E	26	29	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	151	156	first strand
Strand 2	E	159	168	anti-parallel
Strand 3	E	114	118	anti-parallel
Strand 4	E	182	183	parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	144	147	first strand
Strand 2	E	173	176	anti-parallel

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There are 5 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	265	270	first strand
Strand 2	E	299	304	parallel
Strand 3	E	341	347	parallel
Strand 4	E	240	244	parallel
Strand 5	E	365	368	parallel

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There are 5 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	538	542	first strand
Strand 2	E	572	577	parallel
Strand 3	E	617	623	parallel
Strand 4	E	513	517	parallel
Strand 5	E	642	644	parallel

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There are 7 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	26	29	first strand
Strand 2	F	81	83	parallel
Strand 3	F	38	42	anti-parallel
Strand 4	F	66	74	parallel
Strand 5	F	56	60	anti-parallel
Strand 6	F	99	104	anti-parallel
Strand 7	F	26	29	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	151	156	first strand
Strand 2	F	159	168	anti-parallel
Strand 3	F	114	118	anti-parallel
Strand 4	F	182	183	parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	144	147	first strand
Strand 2	F	173	176	anti-parallel

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There are 5 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	265	270	first strand
Strand 2	F	299	304	parallel
Strand 3	F	341	347	parallel
Strand 4	F	240	244	parallel
Strand 5	F	365	368	parallel

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There are 5 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	538	542	first strand
Strand 2	F	572	577	parallel
Strand 3	F	617	623	parallel
Strand 4	F	513	517	parallel
Strand 5	F	642	644	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7BPA

Analysis of interatomic Contacts of Structural Units in PDB entry:
7BPA