Analysis of interatomic Contacts of Structural Units in PDB entry:
7BQJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7BQJ entry

There are 2 chains in PDB entry 7BQJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 2GLU 459
B
 VAL 2GLU 459
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 44 helices in PDB entry 7BQJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
3 25Right-handed alpha
Helix 2
AA2
A
43 91Right-handed alpha
Helix 3
AA3
A
92 97Right-handed alpha
Helix 4
AA4
A
105 113Right-handed alpha
Helix 5
AA5
A
115 129Right-handed alpha
Helix 6
AA6
A
143 148Right-handed alpha
Helix 7
AA7
A
152 165Right-handed alpha
Helix 8
AA8
A
165 170Right-handed alpha
Helix 9
AA9
A
173 182Right-handed alpha
Helix 10
AB1
A
190 194Right-handed 310
Helix 11
AB2
A
203 211Right-handed alpha
Helix 12
AB3
A
223 239Right-handed alpha
Helix 13
AB4
A
245 251Right-handed alpha
Helix 14
AB5
A
253 257Right-handed 310
Helix 15
AB6
A
269 279Right-handed alpha
Helix 16
AB7
A
293 302Right-handed alpha
Helix 17
AB8
A
303 307Right-handed 310
Helix 18
AB9
A
334 338Right-handed 310
Helix 19
AC1
A
339 354Right-handed alpha
Helix 20
AC2
A
400 418Right-handed alpha
Helix 21
AC3
A
423 435Right-handed alpha
Helix 22
AC4
B
3 25Right-handed alpha
Helix 23
AC5
B
43 66Right-handed alpha
Helix 24
AC6
B
66 91Right-handed alpha
Helix 25
AC7
B
92 97Right-handed alpha
Helix 26
AC8
B
105 113Right-handed alpha
Helix 27
AC9
B
115 129Right-handed alpha
Helix 28
AD1
B
143 148Right-handed alpha
Helix 29
AD2
B
152 165Right-handed alpha
Helix 30
AD3
B
165 170Right-handed alpha
Helix 31
AD4
B
173 182Right-handed alpha
Helix 32
AD5
B
190 194Right-handed 310
Helix 33
AD6
B
203 211Right-handed alpha
Helix 34
AD7
B
223 238Right-handed alpha
Helix 35
AD8
B
245 251Right-handed alpha
Helix 36
AD9
B
253 257Right-handed 310
Helix 37
AE1
B
269 279Right-handed alpha
Helix 38
AE2
B
293 302Right-handed alpha
Helix 39
AE3
B
303 307Right-handed 310
Helix 40
AE4
B
334 338Right-handed 310
Helix 41
AE5
B
339 354Right-handed alpha
Helix 42
AE6
B
374 381Right-handed alpha
Helix 43
AE7
B
400 418Right-handed alpha
Helix 44
AE8
B
423 435Right-handed alpha
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There are 6 sheets in PDB entry 7BQJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
103 104first strand
Strand 2
A
139 140anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
215 216first strand
Strand 2
A
219 220anti-parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
310 314first strand
Strand 2
A
282 288parallel
Strand 3
A
259 264parallel
Strand 4
A
328 332parallel
Strand 5
A
360 366parallel
Strand 6
A
451 458anti-parallel
Strand 7
A
438 444anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
103 104first strand
Strand 2
B
139 140anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
215 216first strand
Strand 2
B
219 220anti-parallel
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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
310 314first strand
Strand 2
B
282 288parallel
Strand 3
B
259 264parallel
Strand 4
B
328 332parallel
Strand 5
B
360 366parallel
Strand 6
B
451 458anti-parallel
Strand 7
B
438 444anti-parallel
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