Analysis of interatomic Contacts of Structural Units in PDB entry:
7BV3


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7BV3 entry

There are 2 chains in PDB entry 7BV3 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 1LYS 480
B
 LYS 1LYS 480
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 44 helices in PDB entry 7BV3. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
11 29Right-handed alpha
Helix 2
AA2
A
50 55Right-handed 310
Helix 3
AA3
A
59 64Right-handed alpha
Helix 4
AA4
A
84 93Right-handed alpha
Helix 5
AA5
A
93 108Right-handed alpha
Helix 6
AA6
A
118 121Right-handed 310
Helix 7
AA7
A
122 130Right-handed alpha
Helix 8
AA8
A
140 158Right-handed alpha
Helix 9
AA9
A
160 165Right-handed alpha
Helix 10
AB1
A
183 185Right-handed 310
Helix 11
AB2
A
186 190Right-handed 310
Helix 12
AB3
A
191 206Right-handed alpha
Helix 13
AB4
A
220 233Right-handed alpha
Helix 14
AB5
A
257 271Right-handed alpha
Helix 15
AB6
A
289 304Right-handed alpha
Helix 16
AB7
A
328 333Right-handed alpha
Helix 17
AB8
A
336 341Right-handed alpha
Helix 18
AB9
A
352 358Right-handed alpha
Helix 19
AC1
A
370 380Right-handed alpha
Helix 20
AC2
A
392 402Right-handed alpha
Helix 21
AC3
A
423 436Right-handed alpha
Helix 22
AC4
A
444 461Right-handed alpha
Helix 23
AC5
A
465 480Right-handed alpha
Helix 24
AC6
B
11 29Right-handed alpha
Helix 25
AC7
B
90 92Right-handed 310
Helix 26
AC8
B
93 105Right-handed alpha
Helix 27
AC9
B
119 121Right-handed 310
Helix 28
AD1
B
122 130Right-handed alpha
Helix 29
AD2
B
140 157Right-handed alpha
Helix 30
AD3
B
160 165Right-handed 310
Helix 31
AD4
B
183 185Right-handed 310
Helix 32
AD5
B
186 190Right-handed 310
Helix 33
AD6
B
191 206Right-handed alpha
Helix 34
AD7
B
220 233Right-handed alpha
Helix 35
AD8
B
256 271Right-handed alpha
Helix 36
AD9
B
289 304Right-handed alpha
Helix 37
AE1
B
328 332Right-handed 310
Helix 38
AE2
B
336 341Right-handed alpha
Helix 39
AE3
B
352 358Right-handed alpha
Helix 40
AE4
B
370 381Right-handed alpha
Helix 41
AE5
B
392 402Right-handed alpha
Helix 42
AE6
B
423 436Right-handed alpha
Helix 43
AE7
B
444 462Right-handed alpha
Helix 44
AE8
B
465 480Right-handed alpha
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There are 6 sheets in PDB entry 7BV3. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
66 70first strand
Strand 2
A
32 38parallel
Strand 3
A
2 7parallel
Strand 4
A
109 116parallel
Strand 5
A
133 137parallel
Strand 6
A
211 213parallel
Strand 7
A
239 241parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
170 171first strand
Strand 2
A
180 181anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
345 348first strand
Strand 2
A
306 310parallel
Strand 3
A
277 281parallel
Strand 4
A
362 367parallel
Strand 5
A
384 386parallel
Strand 6
A
408 409parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
66 70first strand
Strand 2
B
32 38parallel
Strand 3
B
2 7parallel
Strand 4
B
109 116parallel
Strand 5
B
133 137parallel
Strand 6
B
211 213parallel
Strand 7
B
239 241parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
170 171first strand
Strand 2
B
180 181anti-parallel
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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
345 348first strand
Strand 2
B
306 310parallel
Strand 3
B
277 281parallel
Strand 4
B
362 367parallel
Strand 5
B
384 386parallel
Strand 6
B
408 409parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il