Analysis of interatomic Contacts of Structural Units in PDB entry:
7BVC

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7BVC entry

There are 3 chains in PDB entry 7BVC (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 3	PRO 1080
B	GLY 20	PRO 1082
P	ALA 2	LEU 91

There are 79 helices in PDB entry 7BVC. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	5	15	Right-handed alpha
Helix 2	AA2	A	123	128	Right-handed alpha
Helix 3	AA3	A	195	220	Right-handed alpha
Helix 4	AA4	A	236	251	Right-handed alpha
Helix 5	AA5	A	261	272	Right-handed alpha
Helix 6	AA6	A	283	287	Right-handed 310
Helix 7	AA7	A	293	303	Right-handed alpha
Helix 8	AA8	A	308	313	Right-handed alpha
Helix 9	AA9	A	314	316	Right-handed 310
Helix 10	AB1	A	317	330	Right-handed alpha
Helix 11	AB2	A	331	336	Right-handed alpha
Helix 12	AB3	A	336	342	Right-handed alpha
Helix 13	AB4	A	342	358	Right-handed alpha
Helix 14	AB5	A	366	386	Right-handed alpha
Helix 15	AB6	A	390	405	Right-handed alpha
Helix 16	AB7	A	407	413	Right-handed 310
Helix 17	AB8	A	414	429	Right-handed alpha
Helix 18	AB9	A	430	432	Right-handed 310
Helix 19	AC1	A	437	449	Right-handed alpha
Helix 20	AC2	A	450	456	Right-handed alpha
Helix 21	AC3	A	460	475	Right-handed alpha
Helix 22	AC4	A	484	491	Right-handed alpha
Helix 23	AC5	A	501	523	Right-handed alpha
Helix 24	AC6	A	530	548	Right-handed alpha
Helix 25	AC7	A	556	561	Right-handed 310
Helix 26	AC8	A	562	581	Right-handed alpha
Helix 27	AC9	A	584	603	Right-handed alpha
Helix 28	AD1	A	630	651	Right-handed alpha
Helix 29	AD2	A	676	696	Right-handed alpha
Helix 30	AD3	A	702	713	Right-handed alpha
Helix 31	AD4	A	814	818	Right-handed 310
Helix 32	AD5	A	953	957	Right-handed alpha
Helix 33	AD6	A	996	1008	Right-handed alpha
Helix 34	AD7	B	21	32	Right-handed alpha
Helix 35	AD8	B	35	40	Right-handed alpha
Helix 36	AD9	B	108	113	Right-handed alpha
Helix 37	AE1	B	137	141	Right-handed alpha
Helix 38	AE2	B	219	225	Right-handed alpha
Helix 39	AE3	B	230	245	Right-handed alpha
Helix 40	AE4	B	246	248	Right-handed 310
Helix 41	AE5	B	263	280	Right-handed alpha
Helix 42	AE6	B	286	295	Right-handed alpha
Helix 43	AE7	B	295	300	Right-handed alpha
Helix 44	AE8	B	307	311	Right-handed 310
Helix 45	AE9	B	319	327	Right-handed alpha
Helix 46	AF1	B	337	340	Right-handed 310
Helix 47	AF2	B	341	354	Right-handed alpha
Helix 48	AF3	B	356	360	Right-handed 310
Helix 49	AF4	B	366	382	Right-handed alpha
Helix 50	AF5	B	390	412	Right-handed alpha
Helix 51	AF6	B	414	429	Right-handed alpha
Helix 52	AF7	B	431	437	Right-handed 310
Helix 53	AF8	B	438	444	Right-handed alpha
Helix 54	AF9	B	445	456	Right-handed alpha
Helix 55	AG1	B	461	473	Right-handed alpha
Helix 56	AG2	B	475	480	Right-handed alpha
Helix 57	AG3	B	484	498	Right-handed alpha
Helix 58	AG4	B	503	507	Right-handed 310
Helix 59	AG5	B	508	513	Right-handed alpha
Helix 60	AG6	B	526	546	Right-handed alpha
Helix 61	AG7	B	553	571	Right-handed alpha
Helix 62	AG8	B	579	584	Right-handed 310
Helix 63	AG9	B	585	600	Right-handed alpha
Helix 64	AH1	B	607	626	Right-handed alpha
Helix 65	AH2	B	653	676	Right-handed alpha
Helix 66	AH3	B	681	687	Right-handed alpha
Helix 67	AH4	B	689	713	Right-handed alpha
Helix 68	AH5	B	721	726	Right-handed alpha
Helix 69	AH6	B	727	729	Right-handed 310
Helix 70	AH7	B	732	735	Right-handed 310
Helix 71	AH8	B	793	797	Right-handed 310
Helix 72	AH9	B	850	855	Right-handed alpha
Helix 73	AI1	B	958	962	Right-handed alpha
Helix 74	AI2	B	1001	1008	Right-handed alpha
Helix 75	AI3	B	1014	1018	Right-handed 310
Helix 76	AI4	B	1023	1027	Right-handed alpha
Helix 77	AI5	P	4	20	Right-handed alpha
Helix 78	AI6	P	40	53	Right-handed alpha
Helix 79	AI7	P	69	84	Right-handed alpha

There are 21 sheets in PDB entry 7BVC. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	193	194	first strand
Strand 2	A	31	35	anti-parallel
Strand 3	A	1063	1065	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	37	40	first strand
Strand 2	A	182	185	anti-parallel
Strand 3	A	64	66	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	102	103	first strand
Strand 2	A	108	112	anti-parallel
Strand 3	A	117	122	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	951	952	first strand
Strand 2	A	724	726	anti-parallel
Strand 3	A	1030	1032	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	826	827	first strand
Strand 2	A	941	942	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	838	839	first strand
Strand 2	A	924	929	anti-parallel
Strand 3	A	843	844	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	838	839	first strand
Strand 2	A	924	929	anti-parallel
Strand 3	A	878	881	anti-parallel
Strand 4	A	896	897	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	855	857	first strand
Strand 2	A	911	913	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	865	866	first strand
Strand 2	A	872	873	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	977	978	first strand
Strand 2	A	962	965	parallel
Strand 3	A	991	993	parallel
Strand 4	A	1043	1048	anti-parallel
Strand 5	A	1023	1025	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	216	218	first strand
Strand 2	B	49	55	anti-parallel
Strand 3	B	1063	1068	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	191	192	first strand
Strand 2	B	67	68	anti-parallel
Strand 3	B	1058	1059	parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	147	149	first strand
Strand 2	B	80	84	anti-parallel
Strand 3	B	205	207	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	97	100	first strand
Strand 2	B	114	118	anti-parallel
Strand 3	B	122	127	anti-parallel
Strand 4	B	131	136	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	157	159	first strand
Strand 2	B	178	180	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	956	957	first strand
Strand 2	B	737	739	anti-parallel
Strand 3	B	1035	1037	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	826	827	first strand
Strand 2	B	945	947	anti-parallel
Strand 3	B	860	866	anti-parallel
Strand 4	B	914	918	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	837	840	first strand
Strand 2	B	929	936	anti-parallel
Strand 3	B	844	845	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	837	840	first strand
Strand 2	B	929	936	anti-parallel
Strand 3	B	882	889	anti-parallel
Strand 4	B	897	898	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	968	970	first strand
Strand 2	B	996	999	parallel
Strand 3	B	1047	1053	anti-parallel
Strand 4	B	1028	1032	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	986	987	first strand
Strand 2	B	990	991	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7BVC

Analysis of interatomic Contacts of Structural Units in PDB entry:
7BVC