Analysis of interatomic Contacts of Structural Units in PDB entry:
7BVD

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7BVD entry

There are 2 chains in PDB entry 7BVD (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 21	PRO 524
B	GLY 20	PRO 524

There are 26 helices in PDB entry 7BVD. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	28	37	Right-handed alpha
Helix 2	AA2	A	54	63	Right-handed alpha
Helix 3	AA3	A	117	130	Right-handed alpha
Helix 4	AA4	A	150	156	Right-handed 310
Helix 5	AA5	A	205	225	Right-handed alpha
Helix 6	AA6	A	247	264	Right-handed alpha
Helix 7	AA7	A	283	295	Right-handed alpha
Helix 8	AA8	A	349	360	Right-handed alpha
Helix 9	AA9	A	363	380	Right-handed alpha
Helix 10	AB1	A	417	426	Right-handed alpha
Helix 11	AB2	A	428	431	Right-handed 310
Helix 12	AB3	A	435	447	Right-handed alpha
Helix 13	AB4	A	496	519	Right-handed alpha
Helix 14	AB5	B	28	37	Right-handed alpha
Helix 15	AB6	B	54	63	Right-handed alpha
Helix 16	AB7	B	117	130	Right-handed alpha
Helix 17	AB8	B	150	156	Right-handed 310
Helix 18	AB9	B	205	225	Right-handed alpha
Helix 19	AC1	B	247	264	Right-handed alpha
Helix 20	AC2	B	283	295	Right-handed alpha
Helix 21	AC3	B	351	359	Right-handed alpha
Helix 22	AC4	B	367	380	Right-handed alpha
Helix 23	AC5	B	417	426	Right-handed alpha
Helix 24	AC6	B	428	431	Right-handed 310
Helix 25	AC7	B	435	447	Right-handed alpha
Helix 26	AC8	B	496	519	Right-handed alpha

There are 10 sheets in PDB entry 7BVD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 11 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	41	49	first strand
Strand 2	A	189	197	anti-parallel
Strand 3	A	179	184	anti-parallel
Strand 4	A	84	88	anti-parallel
Strand 5	A	70	73	anti-parallel
Strand 6	A	299	306	anti-parallel
Strand 7	A	312	320	anti-parallel
Strand 8	A	475	479	anti-parallel
Strand 9	A	482	488	anti-parallel
Strand 10	A	273	279	anti-parallel
Strand 11	A	243	244	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	75	76	first strand
Strand 2	A	80	81	anti-parallel

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There are 10 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	101	106	first strand
Strand 2	A	93	98	anti-parallel
Strand 3	A	172	177	anti-parallel
Strand 4	A	143	148	anti-parallel
Strand 5	A	457	462	anti-parallel
Strand 6	A	467	471	anti-parallel
Strand 7	A	323	328	anti-parallel
Strand 8	A	331	334	anti-parallel
Strand 9	A	402	411	anti-parallel
Strand 10	A	337	341	anti-parallel

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There are 10 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	101	106	first strand
Strand 2	A	93	98	anti-parallel
Strand 3	A	172	177	anti-parallel
Strand 4	A	143	148	anti-parallel
Strand 5	A	457	462	anti-parallel
Strand 6	A	467	471	anti-parallel
Strand 7	A	323	328	anti-parallel
Strand 8	A	331	334	anti-parallel
Strand 9	A	402	411	anti-parallel
Strand 10	A	388	397	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	269	270	first strand
Strand 2	A	433	434	anti-parallel

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There are 11 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	41	49	first strand
Strand 2	B	189	197	anti-parallel
Strand 3	B	179	184	anti-parallel
Strand 4	B	84	88	anti-parallel
Strand 5	B	70	73	anti-parallel
Strand 6	B	299	306	anti-parallel
Strand 7	B	312	320	anti-parallel
Strand 8	B	475	479	anti-parallel
Strand 9	B	482	488	anti-parallel
Strand 10	B	273	279	anti-parallel
Strand 11	B	243	244	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	75	76	first strand
Strand 2	B	80	81	anti-parallel

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There are 10 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	101	106	first strand
Strand 2	B	93	98	anti-parallel
Strand 3	B	172	177	anti-parallel
Strand 4	B	143	148	anti-parallel
Strand 5	B	457	462	anti-parallel
Strand 6	B	467	471	anti-parallel
Strand 7	B	323	328	anti-parallel
Strand 8	B	331	334	anti-parallel
Strand 9	B	402	411	anti-parallel
Strand 10	B	337	341	anti-parallel

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There are 10 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	101	106	first strand
Strand 2	B	93	98	anti-parallel
Strand 3	B	172	177	anti-parallel
Strand 4	B	143	148	anti-parallel
Strand 5	B	457	462	anti-parallel
Strand 6	B	467	471	anti-parallel
Strand 7	B	323	328	anti-parallel
Strand 8	B	331	334	anti-parallel
Strand 9	B	402	411	anti-parallel
Strand 10	B	388	397	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	269	270	first strand
Strand 2	B	433	434	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7BVD

Analysis of interatomic Contacts of Structural Units in PDB entry:
7BVD