Analysis of interatomic Contacts of Structural Units in PDB entry:
7BVF

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7BVF entry

There are 3 chains in PDB entry 7BVF (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	ARG 24	PRO 1098
A	ARG 8	PRO 1094
P	ALA 2	GLU 81

There are 86 helices in PDB entry 7BVF. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	24	40	Right-handed alpha
Helix 2	AA2	B	43	47	Right-handed 310
Helix 3	AA3	B	84	90	Right-handed alpha
Helix 4	AA4	B	137	141	Right-handed alpha
Helix 5	AA5	B	215	240	Right-handed alpha
Helix 6	AA6	B	277	294	Right-handed alpha
Helix 7	AA7	B	299	309	Right-handed alpha
Helix 8	AA8	B	333	341	Right-handed alpha
Helix 9	AA9	B	346	351	Right-handed alpha
Helix 10	AB1	B	352	369	Right-handed alpha
Helix 11	AB2	B	370	373	Right-handed 310
Helix 12	AB3	B	380	396	Right-handed alpha
Helix 13	AB4	B	404	423	Right-handed alpha
Helix 14	AB5	B	429	443	Right-handed alpha
Helix 15	AB6	B	445	449	Right-handed 310
Helix 16	AB7	B	451	458	Right-handed alpha
Helix 17	AB8	B	459	471	Right-handed alpha
Helix 18	AB9	B	475	480	Right-handed alpha
Helix 19	AC1	B	480	485	Right-handed alpha
Helix 20	AC2	B	489	494	Right-handed alpha
Helix 21	AC3	B	498	512	Right-handed alpha
Helix 22	AC4	B	517	520	Right-handed 310
Helix 23	AC5	B	521	527	Right-handed alpha
Helix 24	AC6	B	528	530	Right-handed 310
Helix 25	AC7	B	536	560	Right-handed alpha
Helix 26	AC8	B	569	585	Right-handed alpha
Helix 27	AC9	B	592	601	Right-handed 310
Helix 28	AD1	B	602	614	Right-handed alpha
Helix 29	AD2	B	621	640	Right-handed alpha
Helix 30	AD3	B	662	666	Right-handed 310
Helix 31	AD4	B	667	688	Right-handed alpha
Helix 32	AD5	B	696	702	Right-handed alpha
Helix 33	AD6	B	705	728	Right-handed alpha
Helix 34	AD7	B	734	742	Right-handed alpha
Helix 35	AD8	B	747	751	Right-handed 310
Helix 36	AD9	B	812	816	Right-handed 310
Helix 37	AE1	B	974	978	Right-handed alpha
Helix 38	AE2	B	1017	1024	Right-handed alpha
Helix 39	AE3	B	1024	1029	Right-handed alpha
Helix 40	AE4	B	1030	1034	Right-handed 310
Helix 41	AE5	B	1039	1044	Right-handed alpha
Helix 42	AE6	A	10	28	Right-handed alpha
Helix 43	AE7	A	30	34	Right-handed 310
Helix 44	AE8	A	76	80	Right-handed alpha
Helix 45	AE9	A	130	134	Right-handed 310
Helix 46	AF1	A	155	159	Right-handed 310
Helix 47	AF2	A	205	229	Right-handed alpha
Helix 48	AF3	A	250	264	Right-handed alpha
Helix 49	AF4	A	274	288	Right-handed alpha
Helix 50	AF5	A	295	299	Right-handed 310
Helix 51	AF6	A	307	318	Right-handed alpha
Helix 52	AF7	A	320	325	Right-handed alpha
Helix 53	AF8	A	326	347	Right-handed alpha
Helix 54	AF9	A	358	373	Right-handed alpha
Helix 55	AG1	A	381	403	Right-handed alpha
Helix 56	AG2	A	405	419	Right-handed alpha
Helix 57	AG3	A	420	421	Right-handed 310
Helix 58	AG4	A	422	428	Right-handed 310
Helix 59	AG5	A	429	435	Right-handed alpha
Helix 60	AG6	A	436	446	Right-handed alpha
Helix 61	AG7	A	453	462	Right-handed alpha
Helix 62	AG8	A	463	465	Right-handed 310
Helix 63	AG9	A	466	471	Right-handed alpha
Helix 64	AH1	A	475	489	Right-handed alpha
Helix 65	AH2	A	494	498	Right-handed 310
Helix 66	AH3	A	510	514	Right-handed 310
Helix 67	AH4	A	517	537	Right-handed alpha
Helix 68	AH5	A	545	563	Right-handed alpha
Helix 69	AH6	A	564	566	Right-handed 310
Helix 70	AH7	A	571	576	Right-handed 310
Helix 71	AH8	A	577	595	Right-handed alpha
Helix 72	AH9	A	600	618	Right-handed alpha
Helix 73	AI1	A	645	668	Right-handed alpha
Helix 74	AI2	A	682	686	Right-handed 310
Helix 75	AI3	A	689	712	Right-handed alpha
Helix 76	AI4	A	717	727	Right-handed alpha
Helix 77	AI5	A	833	837	Right-handed 310
Helix 78	AI6	A	967	971	Right-handed alpha
Helix 79	AI7	A	981	985	Right-handed 310
Helix 80	AI8	A	1010	1017	Right-handed alpha
Helix 81	AI9	A	1017	1022	Right-handed alpha
Helix 82	AJ1	A	1028	1032	Right-handed 310
Helix 83	AJ2	P	11	21	Right-handed alpha
Helix 84	AJ3	P	23	27	Right-handed 310
Helix 85	AJ4	P	40	55	Right-handed alpha
Helix 86	AJ5	P	69	81	Right-handed alpha

There are 22 sheets in PDB entry 7BVF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	78	81	first strand
Strand 2	B	202	205	anti-parallel
Strand 3	B	49	56	anti-parallel
Strand 4	B	212	214	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	78	81	first strand
Strand 2	B	202	205	anti-parallel
Strand 3	B	49	56	anti-parallel
Strand 4	B	1080	1084	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	122	126	first strand
Strand 2	B	131	136	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	972	973	first strand
Strand 2	B	753	756	anti-parallel
Strand 3	B	1050	1053	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	797	798	first strand
Strand 2	B	801	802	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	845	846	first strand
Strand 2	B	961	967	anti-parallel
Strand 3	B	874	881	anti-parallel
Strand 4	B	932	935	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	858	859	first strand
Strand 2	B	949	950	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	863	864	first strand
Strand 2	B	945	947	anti-parallel
Strand 3	B	901	903	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	984	986	first strand
Strand 2	B	1012	1015	parallel
Strand 3	B	1063	1067	anti-parallel
Strand 4	B	1046	1048	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	36	38	first strand
Strand 2	A	1079	1081	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	42	45	first strand
Strand 2	A	186	190	anti-parallel
Strand 3	A	69	75	anti-parallel
Strand 4	A	138	142	anti-parallel
Strand 5	A	148	152	anti-parallel
Strand 6	A	160	162	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	58	59	first strand
Strand 2	A	172	173	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	90	91	first strand
Strand 2	A	106	109	anti-parallel
Strand 3	A	113	116	anti-parallel
Strand 4	A	126	127	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	965	966	first strand
Strand 2	A	739	742	anti-parallel
Strand 3	A	1043	1046	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	786	787	first strand
Strand 2	A	804	805	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	850	853	first strand
Strand 2	A	942	945	anti-parallel
Strand 3	A	891	892	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	857	858	first strand
Strand 2	A	938	939	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	868	873	first strand
Strand 2	A	923	928	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	879	880	first strand
Strand 2	A	886	887	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	896	899	first strand
Strand 2	A	905	908	anti-parallel

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There are 5 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	991	992	first strand
Strand 2	A	976	979	parallel
Strand 3	A	1005	1008	parallel
Strand 4	A	1056	1062	anti-parallel
Strand 5	A	1037	1039	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	995	996	first strand
Strand 2	A	999	1000	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7BVF

Analysis of interatomic Contacts of Structural Units in PDB entry:
7BVF