Analysis of interatomic Contacts of Structural Units in PDB entry:
7BVG

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7BVG entry

There are 3 chains in PDB entry 7BVG (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 3	PRO 1080
B	GLY 20	PRO 1082
P	ALA 2	LYS 94

There are 80 helices in PDB entry 7BVG. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	6	15	Right-handed alpha
Helix 2	AA2	A	16	25	Right-handed alpha
Helix 3	AA3	A	95	99	Right-handed 310
Helix 4	AA4	A	122	127	Right-handed alpha
Helix 5	AA5	A	158	162	Right-handed 310
Helix 6	AA6	A	195	220	Right-handed alpha
Helix 7	AA7	A	221	223	Right-handed 310
Helix 8	AA8	A	235	251	Right-handed alpha
Helix 9	AA9	A	263	271	Right-handed alpha
Helix 10	AB1	A	283	287	Right-handed 310
Helix 11	AB2	A	295	303	Right-handed alpha
Helix 12	AB3	A	308	313	Right-handed alpha
Helix 13	AB4	A	314	330	Right-handed alpha
Helix 14	AB5	A	331	336	Right-handed alpha
Helix 15	AB6	A	336	341	Right-handed alpha
Helix 16	AB7	A	342	358	Right-handed alpha
Helix 17	AB8	A	366	386	Right-handed alpha
Helix 18	AB9	A	391	405	Right-handed alpha
Helix 19	AC1	A	407	413	Right-handed 310
Helix 20	AC2	A	414	419	Right-handed alpha
Helix 21	AC3	A	420	429	Right-handed alpha
Helix 22	AC4	A	441	447	Right-handed alpha
Helix 23	AC5	A	450	455	Right-handed alpha
Helix 24	AC6	A	460	474	Right-handed alpha
Helix 25	AC7	A	479	482	Right-handed 310
Helix 26	AC8	A	483	491	Right-handed alpha
Helix 27	AC9	A	499	523	Right-handed alpha
Helix 28	AD1	A	530	548	Right-handed alpha
Helix 29	AD2	A	555	561	Right-handed 310
Helix 30	AD3	A	562	583	Right-handed alpha
Helix 31	AD4	A	584	603	Right-handed alpha
Helix 32	AD5	A	630	652	Right-handed alpha
Helix 33	AD6	A	664	669	Right-handed alpha
Helix 34	AD7	A	676	696	Right-handed alpha
Helix 35	AD8	A	702	713	Right-handed alpha
Helix 36	AD9	A	819	823	Right-handed 310
Helix 37	AE1	A	996	1008	Right-handed alpha
Helix 38	AE2	B	23	32	Right-handed alpha
Helix 39	AE3	B	35	40	Right-handed alpha
Helix 40	AE4	B	108	113	Right-handed alpha
Helix 41	AE5	B	137	141	Right-handed alpha
Helix 42	AE6	B	221	227	Right-handed alpha
Helix 43	AE7	B	230	245	Right-handed alpha
Helix 44	AE8	B	246	248	Right-handed 310
Helix 45	AE9	B	263	274	Right-handed alpha
Helix 46	AF1	B	275	280	Right-handed alpha
Helix 47	AF2	B	285	295	Right-handed alpha
Helix 48	AF3	B	295	300	Right-handed alpha
Helix 49	AF4	B	307	311	Right-handed 310
Helix 50	AF5	B	319	327	Right-handed alpha
Helix 51	AF6	B	338	354	Right-handed alpha
Helix 52	AF7	B	356	360	Right-handed 310
Helix 53	AF8	B	366	382	Right-handed alpha
Helix 54	AF9	B	390	412	Right-handed alpha
Helix 55	AG1	B	414	429	Right-handed alpha
Helix 56	AG2	B	435	444	Right-handed alpha
Helix 57	AG3	B	445	460	Right-handed alpha
Helix 58	AG4	B	461	473	Right-handed alpha
Helix 59	AG5	B	475	480	Right-handed alpha
Helix 60	AG6	B	484	499	Right-handed alpha
Helix 61	AG7	B	503	507	Right-handed 310
Helix 62	AG8	B	508	516	Right-handed alpha
Helix 63	AG9	B	526	546	Right-handed alpha
Helix 64	AH1	B	553	570	Right-handed alpha
Helix 65	AH2	B	579	583	Right-handed 310
Helix 66	AH3	B	584	600	Right-handed alpha
Helix 67	AH4	B	607	626	Right-handed alpha
Helix 68	AH5	B	654	675	Right-handed alpha
Helix 69	AH6	B	681	687	Right-handed alpha
Helix 70	AH7	B	689	713	Right-handed alpha
Helix 71	AH8	B	720	727	Right-handed alpha
Helix 72	AH9	B	958	962	Right-handed alpha
Helix 73	AI1	B	1001	1006	Right-handed alpha
Helix 74	AI2	B	1014	1018	Right-handed 310
Helix 75	AI3	B	1019	1023	Right-handed 310
Helix 76	AI4	P	4	20	Right-handed alpha
Helix 77	AI5	P	40	55	Right-handed alpha
Helix 78	AI6	P	60	65	Right-handed alpha
Helix 79	AI7	P	69	83	Right-handed alpha
Helix 80	AI8	P	87	91	Right-handed 310

There are 21 sheets in PDB entry 7BVG. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	31	32	first strand
Strand 2	A	193	194	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	37	39	first strand
Strand 2	A	183	185	anti-parallel
Strand 3	A	64	66	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	951	952	first strand
Strand 2	A	725	726	anti-parallel
Strand 3	A	1030	1031	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	826	827	first strand
Strand 2	A	941	942	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	837	839	first strand
Strand 2	A	924	930	anti-parallel
Strand 3	A	843	844	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	837	839	first strand
Strand 2	A	924	930	anti-parallel
Strand 3	A	877	884	anti-parallel
Strand 4	A	892	897	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	855	858	first strand
Strand 2	A	910	913	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	977	978	first strand
Strand 2	A	962	965	parallel
Strand 3	A	991	994	parallel
Strand 4	A	1042	1048	anti-parallel
Strand 5	A	1023	1028	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	981	982	first strand
Strand 2	A	985	986	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	79	80	first strand
Strand 2	B	207	209	anti-parallel
Strand 3	B	49	56	anti-parallel
Strand 4	B	216	218	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	79	80	first strand
Strand 2	B	207	209	anti-parallel
Strand 3	B	49	56	anti-parallel
Strand 4	B	1063	1068	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	191	192	first strand
Strand 2	B	67	68	anti-parallel
Strand 3	B	1058	1059	parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	82	84	first strand
Strand 2	B	147	149	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	97	100	first strand
Strand 2	B	114	117	anti-parallel
Strand 3	B	122	127	anti-parallel
Strand 4	B	131	136	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	157	159	first strand
Strand 2	B	178	180	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	956	957	first strand
Strand 2	B	737	739	anti-parallel
Strand 3	B	1035	1037	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	826	828	first strand
Strand 2	B	945	947	anti-parallel
Strand 3	B	860	866	anti-parallel
Strand 4	B	914	918	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	838	840	first strand
Strand 2	B	929	935	anti-parallel
Strand 3	B	844	845	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	838	840	first strand
Strand 2	B	929	935	anti-parallel
Strand 3	B	885	890	anti-parallel
Strand 4	B	896	898	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	968	970	first strand
Strand 2	B	996	999	parallel
Strand 3	B	1047	1053	anti-parallel
Strand 4	B	1028	1032	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	986	987	first strand
Strand 2	B	990	991	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7BVG

Analysis of interatomic Contacts of Structural Units in PDB entry:
7BVG