Analysis of interatomic Contacts of Structural Units in PDB entry:
7BVJ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7BVJ entry

There are 4 chains in PDB entry 7BVJ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	ARG 313
B	ILE 2	LEU 314
C	MET 1	GLN 312
D	MET 1	GLN 312

There are 50 helices in PDB entry 7BVJ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	12	26	Right-handed alpha
Helix 2	AA2	A	35	47	Right-handed alpha
Helix 3	AA3	A	53	60	Right-handed alpha
Helix 4	AA4	A	69	71	Right-handed 310
Helix 5	AA5	A	72	83	Right-handed alpha
Helix 6	AA6	A	96	111	Right-handed alpha
Helix 7	AA7	A	118	122	Right-handed 310
Helix 8	AA8	A	123	133	Right-handed alpha
Helix 9	AA9	A	151	155	Right-handed 310
Helix 10	AB1	A	162	174	Right-handed alpha
Helix 11	AB2	A	267	283	Right-handed alpha
Helix 12	AB3	A	289	313	Right-handed alpha
Helix 13	AB4	B	12	26	Right-handed alpha
Helix 14	AB5	B	35	47	Right-handed alpha
Helix 15	AB6	B	53	60	Right-handed alpha
Helix 16	AB7	B	69	71	Right-handed 310
Helix 17	AB8	B	72	83	Right-handed alpha
Helix 18	AB9	B	96	111	Right-handed alpha
Helix 19	AC1	B	118	122	Right-handed 310
Helix 20	AC2	B	123	132	Right-handed alpha
Helix 21	AC3	B	156	161	Right-handed alpha
Helix 22	AC4	B	161	174	Right-handed alpha
Helix 23	AC5	B	267	283	Right-handed alpha
Helix 24	AC6	B	289	314	Right-handed alpha
Helix 25	AC7	C	12	26	Right-handed alpha
Helix 26	AC8	C	35	47	Right-handed alpha
Helix 27	AC9	C	53	60	Right-handed alpha
Helix 28	AD1	C	69	71	Right-handed 310
Helix 29	AD2	C	72	83	Right-handed alpha
Helix 30	AD3	C	96	111	Right-handed alpha
Helix 31	AD4	C	118	122	Right-handed 310
Helix 32	AD5	C	123	132	Right-handed alpha
Helix 33	AD6	C	149	155	Right-handed 310
Helix 34	AD7	C	156	161	Right-handed alpha
Helix 35	AD8	C	162	174	Right-handed alpha
Helix 36	AD9	C	267	283	Right-handed alpha
Helix 37	AE1	C	289	312	Right-handed alpha
Helix 38	AE2	D	12	26	Right-handed alpha
Helix 39	AE3	D	35	47	Right-handed alpha
Helix 40	AE4	D	53	60	Right-handed alpha
Helix 41	AE5	D	69	71	Right-handed 310
Helix 42	AE6	D	72	83	Right-handed alpha
Helix 43	AE7	D	96	111	Right-handed alpha
Helix 44	AE8	D	118	122	Right-handed 310
Helix 45	AE9	D	123	132	Right-handed alpha
Helix 46	AF1	D	151	155	Right-handed 310
Helix 47	AF2	D	156	161	Right-handed alpha
Helix 48	AF3	D	162	174	Right-handed alpha
Helix 49	AF4	D	267	283	Right-handed alpha
Helix 50	AF5	D	289	312	Right-handed alpha

There are 8 sheets in PDB entry 7BVJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	49	50	first strand
Strand 2	A	27	32	parallel
Strand 3	A	5	9	parallel
Strand 4	A	63	66	parallel
Strand 5	A	86	90	parallel
Strand 6	A	114	117	parallel

Back to list of sheets
Back to top of page

There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	177	185	first strand
Strand 2	A	194	201	anti-parallel
Strand 3	A	206	215	anti-parallel
Strand 4	A	139	147	parallel
Strand 5	A	219	225	anti-parallel
Strand 6	A	229	234	anti-parallel
Strand 7	A	239	245	anti-parallel
Strand 8	A	256	261	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	49	50	first strand
Strand 2	B	27	32	parallel
Strand 3	B	5	9	parallel
Strand 4	B	63	66	parallel
Strand 5	B	86	90	parallel
Strand 6	B	114	117	parallel

Back to list of sheets
Back to top of page

There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	177	185	first strand
Strand 2	B	194	201	anti-parallel
Strand 3	B	206	212	anti-parallel
Strand 4	B	139	145	parallel
Strand 5	B	219	225	anti-parallel
Strand 6	B	229	234	anti-parallel
Strand 7	B	239	244	anti-parallel
Strand 8	B	258	260	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	49	50	first strand
Strand 2	C	27	32	parallel
Strand 3	C	5	9	parallel
Strand 4	C	63	66	parallel
Strand 5	C	86	90	parallel
Strand 6	C	114	117	parallel

Back to list of sheets
Back to top of page

There are 8 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	177	185	first strand
Strand 2	C	194	201	anti-parallel
Strand 3	C	206	215	anti-parallel
Strand 4	C	139	147	parallel
Strand 5	C	219	225	anti-parallel
Strand 6	C	229	234	anti-parallel
Strand 7	C	239	244	anti-parallel
Strand 8	C	257	261	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	49	50	first strand
Strand 2	D	27	32	parallel
Strand 3	D	5	9	parallel
Strand 4	D	63	66	parallel
Strand 5	D	86	90	parallel
Strand 6	D	114	117	parallel

Back to list of sheets
Back to top of page

There are 8 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	177	184	first strand
Strand 2	D	194	201	anti-parallel
Strand 3	D	206	212	anti-parallel
Strand 4	D	139	145	parallel
Strand 5	D	219	225	anti-parallel
Strand 6	D	229	234	anti-parallel
Strand 7	D	239	244	anti-parallel
Strand 8	D	258	261	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7BVJ

Analysis of interatomic Contacts of Structural Units in PDB entry:
7BVJ