Analysis of interatomic Contacts of Structural Units in PDB entry:
7BVQ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7BVQ entry

There are 2 chains in PDB entry 7BVQ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 884CYS 1392
B
 ASP 888CYS 1392
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 46 helices in PDB entry 7BVQ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
886 902Right-handed alpha
Helix 2
AA2
A
928 941Right-handed alpha
Helix 3
AA3
A
949 970Right-handed alpha
Helix 4
AA4
A
974 981Right-handed alpha
Helix 5
AA5
A
982 1003Right-handed alpha
Helix 6
AA6
A
1004 1013Right-handed alpha
Helix 7
AA7
A
1015 1025Right-handed alpha
Helix 8
AA8
A
1026 1032Right-handed alpha
Helix 9
AA9
A
1032 1046Right-handed alpha
Helix 10
AB1
A
1048 1086Right-handed alpha
Helix 11
AB2
A
1087 1090Right-handed 310
Helix 12
AB3
A
1091 1111Right-handed alpha
Helix 13
AB4
A
1111 1122Right-handed alpha
Helix 14
AB5
A
1126 1162Right-handed alpha
Helix 15
AB6
A
1162 1170Right-handed alpha
Helix 16
AB7
A
1171 1196Right-handed alpha
Helix 17
AB8
A
1203 1211Right-handed alpha
Helix 18
AB9
A
1221 1233Right-handed alpha
Helix 19
AC1
A
1233 1254Right-handed alpha
Helix 20
AC2
A
1315 1350Right-handed alpha
Helix 21
AC3
A
1351 1354Right-handed 310
Helix 22
AC4
A
1355 1378Right-handed alpha
Helix 23
AC5
A
1380 1392Right-handed alpha
Helix 24
AC6
B
890 902Right-handed alpha
Helix 25
AC7
B
928 941Right-handed alpha
Helix 26
AC8
B
949 971Right-handed alpha
Helix 27
AC9
B
973 981Right-handed alpha
Helix 28
AD1
B
982 1002Right-handed alpha
Helix 29
AD2
B
1004 1013Right-handed alpha
Helix 30
AD3
B
1015 1025Right-handed alpha
Helix 31
AD4
B
1026 1032Right-handed alpha
Helix 32
AD5
B
1032 1046Right-handed alpha
Helix 33
AD6
B
1048 1086Right-handed alpha
Helix 34
AD7
B
1087 1090Right-handed 310
Helix 35
AD8
B
1091 1111Right-handed alpha
Helix 36
AD9
B
1111 1121Right-handed alpha
Helix 37
AE1
B
1126 1162Right-handed alpha
Helix 38
AE2
B
1162 1170Right-handed alpha
Helix 39
AE3
B
1171 1191Right-handed alpha
Helix 40
AE4
B
1205 1212Right-handed alpha
Helix 41
AE5
B
1221 1233Right-handed alpha
Helix 42
AE6
B
1233 1256Right-handed alpha
Helix 43
AE7
B
1259 1350Right-handed alpha
Helix 44
AE8
B
1355 1368Right-handed alpha
Helix 45
AE9
B
1368 1378Right-handed alpha
Helix 46
AF1
B
1380 1392Right-handed alpha
Back to top of page

There are 2 sheets in PDB entry 7BVQ. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
904 909first strand
Strand 2
A
915 918anti-parallel
Strand 3
A
921 924anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
904 909first strand
Strand 2
B
915 918anti-parallel
Strand 3
B
921 924anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il