Analysis of interatomic Contacts of Structural Units in PDB entry:
7BWD

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7BWD entry

There are 10 chains in PDB entry 7BWD (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
K	LEU 5	PRO 332
F	LYS 16	GLY 102
G	ARG 11	LYS 119
H	ARG 31	ALA 124
E	LYS 37	GLU 133
A	LYS 37	ALA 135
D	ARG 31	ALA 124
C	ARG 11	SER 122
B	ARG 19	GLY 102
I	T 2	T 58

There are 51 helices in PDB entry 7BWD. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	K	37	48	Right-handed alpha
Helix 2	AA2	K	50	56	Right-handed alpha
Helix 3	AA3	K	68	73	Right-handed alpha
Helix 4	AA4	K	73	90	Right-handed alpha
Helix 5	AA5	K	105	114	Right-handed alpha
Helix 6	AA6	K	169	177	Right-handed alpha
Helix 7	AA7	K	189	197	Right-handed alpha
Helix 8	AA8	K	198	200	Right-handed 310
Helix 9	AA9	K	201	210	Right-handed alpha
Helix 10	AB1	K	228	234	Right-handed alpha
Helix 11	AB2	K	246	254	Right-handed alpha
Helix 12	AB3	K	319	324	Right-handed alpha
Helix 13	AB4	F	25	29	Right-handed 310
Helix 14	AB5	F	30	42	Right-handed alpha
Helix 15	AB6	F	50	63	Right-handed alpha
Helix 16	AB7	F	65	76	Right-handed alpha
Helix 17	AB8	F	86	91	Right-handed alpha
Helix 18	AB9	G	16	22	Right-handed alpha
Helix 19	AC1	G	26	35	Right-handed alpha
Helix 20	AC2	G	46	72	Right-handed alpha
Helix 21	AC3	G	80	88	Right-handed alpha
Helix 22	AC4	G	90	95	Right-handed alpha
Helix 23	AC5	H	37	47	Right-handed alpha
Helix 24	AC6	H	58	79	Right-handed alpha
Helix 25	AC7	H	92	102	Right-handed alpha
Helix 26	AC8	H	103	123	Right-handed alpha
Helix 27	AC9	E	46	55	Right-handed alpha
Helix 28	AD1	E	63	76	Right-handed alpha
Helix 29	AD2	E	85	93	Right-handed alpha
Helix 30	AD3	E	94	97	Right-handed 310
Helix 31	AD4	E	100	114	Right-handed alpha
Helix 32	AD5	E	120	128	Right-handed alpha
Helix 33	AD6	A	46	55	Right-handed alpha
Helix 34	AD7	A	63	75	Right-handed alpha
Helix 35	AD8	A	85	114	Right-handed alpha
Helix 36	AD9	A	120	130	Right-handed alpha
Helix 37	AE1	D	37	47	Right-handed alpha
Helix 38	AE2	D	58	79	Right-handed alpha
Helix 39	AE3	D	92	102	Right-handed alpha
Helix 40	AE4	D	103	123	Right-handed alpha
Helix 41	AE5	C	26	36	Right-handed alpha
Helix 42	AE6	C	46	71	Right-handed alpha
Helix 43	AE7	C	79	85	Right-handed alpha
Helix 44	AE8	B	25	29	Right-handed 310
Helix 45	AE9	B	30	42	Right-handed alpha
Helix 46	AF1	B	49	76	Right-handed alpha
Helix 47	AF2	B	83	91	Right-handed alpha
Helix 48	AF3	L	22	35	Right-handed alpha
Helix 49	AF4	L	56	60	Right-handed 310
Helix 50	AF5	M	22	35	Right-handed alpha
Helix 51	AF6	M	56	60	Right-handed 310

There are 11 sheets in PDB entry 7BWD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	8	9	first strand
Strand 2	K	18	19	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	159	160	first strand
Strand 2	K	237	239	parallel
Strand 3	K	265	267	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	183	184	first strand
Strand 2	K	217	218	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	294	295	first strand
Strand 2	K	313	314	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	96	97	first strand
Strand 2	C	100	101	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	42	43	first strand
Strand 2	H	88	89	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	101	102	first strand
Strand 2	B	97	98	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	118	119	first strand
Strand 2	B	45	46	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	88	89	first strand
Strand 2	C	42	43	parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	12	16	first strand
Strand 2	L	2	6	anti-parallel
Strand 3	L	65	71	parallel
Strand 4	L	41	44	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	12	16	first strand
Strand 2	M	2	6	anti-parallel
Strand 3	M	65	71	parallel
Strand 4	M	41	44	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7BWD

Analysis of interatomic Contacts of Structural Units in PDB entry:
7BWD