Analysis of interatomic Contacts of Structural Units in PDB entry:
7BY0


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7BY0 entry


Note, this PDB entry contains modified residue(s) PHOSPHOTHREONINE (TPO) . This residue is treated as heterogroup (ligand) both in the PDB entry and in LPC/CSU analysis.

There are 14 chains in PDB entry 7BY0 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 38GLY 140
B
 ARG 23PHE 100
C
 ARG 11LYS 118
D
 ARG 31ALA 124
E
 LYS 38GLY 140
F
 ARG 23PHE 100
G
 ARG 11LYS 118
H
 ARG 31ALA 124
I
 T 2 A 144
J
 T 147 A 289
K
 LEU 628ASN 650
K
 PRO 652PRO 679
L
 LEU 628ASN 650
L
 PRO 652PRO 679
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 37 helices in PDB entry 7BY0. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
45 58Right-handed alpha
Helix 2
AA2
A
64 80Right-handed alpha
Helix 3
AA3
A
88 117Right-handed alpha
Helix 4
AA4
A
123 133Right-handed alpha
Helix 5
AA5
B
25 29Right-handed 310
Helix 6
AA6
B
30 42Right-handed alpha
Helix 7
AA7
B
49 76Right-handed alpha
Helix 8
AA8
B
82 94Right-handed alpha
Helix 9
AA9
C
16 21Right-handed alpha
Helix 10
AB1
C
27 37Right-handed alpha
Helix 11
AB2
C
45 71Right-handed alpha
Helix 12
AB3
C
79 90Right-handed alpha
Helix 13
AB4
C
90 97Right-handed alpha
Helix 14
AB5
D
37 47Right-handed alpha
Helix 15
AB6
D
55 84Right-handed alpha
Helix 16
AB7
D
90 102Right-handed alpha
Helix 17
AB8
D
104 122Right-handed alpha
Helix 18
AB9
E
45 56Right-handed alpha
Helix 19
AC1
E
64 80Right-handed alpha
Helix 20
AC2
E
88 117Right-handed alpha
Helix 21
AC3
E
123 133Right-handed alpha
Helix 22
AC4
E
134 138Right-handed 310
Helix 23
AC5
F
25 29Right-handed 310
Helix 24
AC6
F
30 42Right-handed alpha
Helix 25
AC7
F
49 76Right-handed alpha
Helix 26
AC8
F
82 94Right-handed alpha
Helix 27
AC9
G
16 22Right-handed alpha
Helix 28
AD1
G
26 37Right-handed alpha
Helix 29
AD2
G
45 74Right-handed alpha
Helix 30
AD3
G
79 88Right-handed alpha
Helix 31
AD4
G
91 97Right-handed alpha
Helix 32
AD5
H
37 49Right-handed alpha
Helix 33
AD6
H
55 84Right-handed alpha
Helix 34
AD7
H
90 102Right-handed alpha
Helix 35
AD8
H
104 124Right-handed alpha
Helix 36
AD9
K
629 640Right-handed alpha
Helix 37
AE1
L
629 640Right-handed alpha
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There are 5 sheets in PDB entry 7BY0. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
96 97first strand
Strand 2
G
100 101parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
42 43first strand
Strand 2
D
88 89parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
100 101first strand
Strand 2
F
96 97parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
86 87first strand
Strand 2
F
80 81parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
42 43first strand
Strand 2
H
88 89parallel
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