Analysis of interatomic Contacts of Structural Units in PDB entry:
7BY6

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7BY6 entry

There are 2 chains in PDB entry 7BY6 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LEU 271	ILE 569
B	MET 0	MET 617

There are 32 helices in PDB entry 7BY6. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	304	320	Right-handed alpha
Helix 2	AA2	A	334	338	Right-handed alpha
Helix 3	AA3	A	347	351	Right-handed 310
Helix 4	AA4	A	370	384	Right-handed alpha
Helix 5	AA5	A	396	401	Right-handed alpha
Helix 6	AA6	A	409	428	Right-handed alpha
Helix 7	AA7	A	468	482	Right-handed alpha
Helix 8	AA8	A	524	532	Right-handed alpha
Helix 9	AA9	A	546	554	Right-handed alpha
Helix 10	AB1	A	558	562	Right-handed 310
Helix 11	AB2	B	20	32	Right-handed alpha
Helix 12	AB3	B	55	59	Right-handed 310
Helix 13	AB4	B	60	73	Right-handed alpha
Helix 14	AB5	B	101	104	Right-handed 310
Helix 15	AB6	B	122	138	Right-handed alpha
Helix 16	AB7	B	154	156	Right-handed 310
Helix 17	AB8	B	166	169	Right-handed 310
Helix 18	AB9	B	185	191	Right-handed alpha
Helix 19	AC1	B	196	204	Right-handed alpha
Helix 20	AC2	B	248	265	Right-handed alpha
Helix 21	AC3	B	305	314	Right-handed alpha
Helix 22	AC4	B	319	322	Right-handed 310
Helix 23	AC5	B	323	330	Right-handed alpha
Helix 24	AC6	B	355	368	Right-handed alpha
Helix 25	AC7	B	383	398	Right-handed alpha
Helix 26	AC8	B	411	416	Right-handed alpha
Helix 27	AC9	B	460	472	Right-handed alpha
Helix 28	AD1	B	517	530	Right-handed alpha
Helix 29	AD2	B	534	544	Right-handed alpha
Helix 30	AD3	B	588	595	Right-handed alpha
Helix 31	AD4	B	608	612	Right-handed alpha
Helix 32	AD5	B	613	615	Right-handed 310

There are 9 sheets in PDB entry 7BY6. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	323	324	first strand
Strand 2	A	433	442	parallel
Strand 3	A	454	465	anti-parallel
Strand 4	A	537	545	anti-parallel
Strand 5	A	514	523	anti-parallel
Strand 6	A	498	507	anti-parallel
Strand 7	A	488	492	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	331	333	first strand
Strand 2	A	403	405	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	3	6	first strand
Strand 2	B	46	50	anti-parallel
Strand 3	B	34	39	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	219	221	first strand
Strand 2	B	209	214	anti-parallel
Strand 3	B	160	165	anti-parallel
Strand 4	B	97	99	parallel
Strand 5	B	278	280	parallel
Strand 6	B	291	292	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	109	115	first strand
Strand 2	B	240	246	anti-parallel
Strand 3	B	146	152	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	171	172	first strand
Strand 2	B	181	182	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	333	338	first strand
Strand 2	B	341	345	anti-parallel

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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	402	404	first strand
Strand 2	B	478	489	parallel
Strand 3	B	498	509	anti-parallel
Strand 4	B	601	607	anti-parallel
Strand 5	B	579	587	anti-parallel
Strand 6	B	564	575	anti-parallel
Strand 7	B	553	558	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	409	410	first strand
Strand 2	B	455	456	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7BY6

Analysis of interatomic Contacts of Structural Units in PDB entry:
7BY6