Analysis of interatomic Contacts of Structural Units in PDB entry:
7BYI


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7BYI entry

There are 2 chains in PDB entry 7BYI (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 42HIS 504
B
 TRP 43HIS 504
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 41 helices in PDB entry 7BYI. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
48 53Right-handed alpha
Helix 2
AA2
A
53 70Right-handed alpha
Helix 3
AA3
A
81 89Right-handed alpha
Helix 4
AA4
A
90 95Right-handed 310
Helix 5
AA5
A
109 127Right-handed alpha
Helix 6
AA6
A
142 155Right-handed alpha
Helix 7
AA7
A
171 175Right-handed 310
Helix 8
AA8
A
185 190Right-handed alpha
Helix 9
AA9
A
205 216Right-handed alpha
Helix 10
AB1
A
236 245Right-handed alpha
Helix 11
AB2
A
255 261Right-handed alpha
Helix 12
AB3
A
266 270Right-handed 310
Helix 13
AB4
A
310 320Right-handed alpha
Helix 14
AB5
A
328 343Right-handed alpha
Helix 15
AB6
A
344 368Right-handed alpha
Helix 16
AB7
A
392 402Right-handed alpha
Helix 17
AB8
A
428 433Right-handed alpha
Helix 18
AB9
A
437 460Right-handed alpha
Helix 19
AC1
A
465 475Right-handed alpha
Helix 20
AC2
A
475 495Right-handed alpha
Helix 21
AC3
B
48 53Right-handed alpha
Helix 22
AC4
B
53 70Right-handed alpha
Helix 23
AC5
B
81 89Right-handed alpha
Helix 24
AC6
B
90 95Right-handed 310
Helix 25
AC7
B
109 128Right-handed alpha
Helix 26
AC8
B
142 155Right-handed alpha
Helix 27
AC9
B
171 175Right-handed 310
Helix 28
AD1
B
184 190Right-handed alpha
Helix 29
AD2
B
205 216Right-handed alpha
Helix 30
AD3
B
233 245Right-handed alpha
Helix 31
AD4
B
255 262Right-handed alpha
Helix 32
AD5
B
266 270Right-handed 310
Helix 33
AD6
B
279 283Right-handed 310
Helix 34
AD7
B
310 320Right-handed alpha
Helix 35
AD8
B
328 341Right-handed alpha
Helix 36
AD9
B
344 367Right-handed alpha
Helix 37
AE1
B
392 402Right-handed alpha
Helix 38
AE2
B
428 433Right-handed alpha
Helix 39
AE3
B
439 460Right-handed alpha
Helix 40
AE4
B
464 475Right-handed alpha
Helix 41
AE5
B
475 495Right-handed alpha
Back to top of page

There are 9 sheets in PDB entry 7BYI. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
71 72first strand
Strand 2
A
405 406parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
134 137first strand
Strand 2
A
288 293anti-parallel
Strand 3
A
273 277anti-parallel
Strand 4
A
247 251parallel
Strand 5
A
220 223parallel
Strand 6
A
160 163parallel
Strand 7
A
191 194parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
197 198first strand
Strand 2
A
203 204anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
296 298first strand
Strand 2
A
307 308anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
381 385first strand
Strand 2
A
423 427anti-parallel
Strand 3
A
408 410anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
71 72first strand
Strand 2
B
405 406parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
99 100first strand
Strand 2
B
103 104anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
134 137first strand
Strand 2
B
288 293anti-parallel
Strand 3
B
273 277anti-parallel
Strand 4
B
247 251parallel
Strand 5
B
220 224parallel
Strand 6
B
160 163parallel
Strand 7
B
191 192parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
371 373first strand
Strand 2
B
381 385anti-parallel
Strand 3
B
423 427anti-parallel
Strand 4
B
408 410anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il