Analysis of interatomic Contacts of Structural Units in PDB entry:
7BYM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7BYM entry

There are 8 chains in PDB entry 7BYM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 74GLY 588
C
 SER 74GLY 588
E
 SER 74GLY 588
G
 SER 74GLY 588
B
 ASP 2ALA 147
D
 ASP 2ALA 147
F
 ASP 2ALA 147
H
 ASP 2ALA 147
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are103 helices in PDB entry 7BYM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
74 93Right-handed alpha
Helix 2
AA2
A
98 121Right-handed alpha
Helix 3
AA3
A
124 154Right-handed alpha
Helix 4
AA4
A
155 157Right-handed 310
Helix 5
AA5
A
161 171Right-handed alpha
Helix 6
AA6
A
172 192Right-handed alpha
Helix 7
AA7
A
200 206Right-handed alpha
Helix 8
AA8
A
209 216Right-handed alpha
Helix 9
AA9
A
221 234Right-handed alpha
Helix 10
AB1
A
234 261Right-handed alpha
Helix 11
AB2
A
269 282Right-handed alpha
Helix 12
AB3
A
293 312Right-handed alpha
Helix 13
AB4
A
312 336Right-handed alpha
Helix 14
AB5
A
339 355Right-handed alpha
Helix 15
AB6
A
356 357Right-handed 310
Helix 16
AB7
A
358 362Right-handed 310
Helix 17
AB8
A
528 553Right-handed alpha
Helix 18
AB9
A
559 587Right-handed alpha
Helix 19
AC1
C
75 93Right-handed alpha
Helix 20
AC2
C
98 121Right-handed alpha
Helix 21
AC3
C
124 154Right-handed alpha
Helix 22
AC4
C
155 157Right-handed 310
Helix 23
AC5
C
161 171Right-handed alpha
Helix 24
AC6
C
172 192Right-handed alpha
Helix 25
AC7
C
200 206Right-handed alpha
Helix 26
AC8
C
209 216Right-handed alpha
Helix 27
AC9
C
221 234Right-handed alpha
Helix 28
AD1
C
234 261Right-handed alpha
Helix 29
AD2
C
269 282Right-handed alpha
Helix 30
AD3
C
293 312Right-handed alpha
Helix 31
AD4
C
312 336Right-handed alpha
Helix 32
AD5
C
339 355Right-handed alpha
Helix 33
AD6
C
356 357Right-handed 310
Helix 34
AD7
C
358 362Right-handed 310
Helix 35
AD8
C
528 552Right-handed alpha
Helix 36
AD9
C
559 587Right-handed alpha
Helix 37
AE1
E
75 93Right-handed alpha
Helix 38
AE2
E
98 121Right-handed alpha
Helix 39
AE3
E
124 154Right-handed alpha
Helix 40
AE4
E
155 157Right-handed 310
Helix 41
AE5
E
161 171Right-handed alpha
Helix 42
AE6
E
172 192Right-handed alpha
Helix 43
AE7
E
200 206Right-handed alpha
Helix 44
AE8
E
209 216Right-handed alpha
Helix 45
AE9
E
221 234Right-handed alpha
Helix 46
AF1
E
234 261Right-handed alpha
Helix 47
AF2
E
269 282Right-handed alpha
Helix 48
AF3
E
293 336Right-handed alpha
Helix 49
AF4
E
339 355Right-handed alpha
Helix 50
AF5
E
356 357Right-handed 310
Helix 51
AF6
E
358 362Right-handed 310
Helix 52
AF7
E
528 553Right-handed alpha
Helix 53
AF8
E
559 587Right-handed alpha
Helix 54
AF9
G
75 93Right-handed alpha
Helix 55
AG1
G
98 121Right-handed alpha
Helix 56
AG2
G
124 154Right-handed alpha
Helix 57
AG3
G
155 157Right-handed 310
Helix 58
AG4
G
161 171Right-handed alpha
Helix 59
AG5
G
172 192Right-handed alpha
Helix 60
AG6
G
200 206Right-handed alpha
Helix 61
AG7
G
209 216Right-handed alpha
Helix 62
AG8
G
221 234Right-handed alpha
Helix 63
AG9
G
234 261Right-handed alpha
Helix 64
AH1
G
269 282Right-handed alpha
Helix 65
AH2
G
293 312Right-handed alpha
Helix 66
AH3
G
312 336Right-handed alpha
Helix 67
AH4
G
339 355Right-handed alpha
Helix 68
AH5
G
356 357Right-handed 310
Helix 69
AH6
G
358 362Right-handed 310
Helix 70
AH7
G
528 553Right-handed alpha
Helix 71
AH8
G
559 587Right-handed alpha
Helix 72
AH9
B
5 20Right-handed alpha
Helix 73
AI1
B
28 39Right-handed alpha
Helix 74
AI2
B
44 54Right-handed alpha
Helix 75
AI3
B
65 75Right-handed alpha
Helix 76
AI4
B
78 92Right-handed alpha
Helix 77
AI5
B
102 112Right-handed alpha
Helix 78
AI6
B
117 128Right-handed alpha
Helix 79
AI7
B
138 146Right-handed alpha
Helix 80
AI8
D
5 20Right-handed alpha
Helix 81
AI9
D
28 39Right-handed alpha
Helix 82
AJ1
D
44 54Right-handed alpha
Helix 83
AJ2
D
65 75Right-handed alpha
Helix 84
AJ3
D
78 92Right-handed alpha
Helix 85
AJ4
D
102 112Right-handed alpha
Helix 86
AJ5
D
117 128Right-handed alpha
Helix 87
AJ6
D
138 146Right-handed alpha
Helix 88
AJ7
F
5 20Right-handed alpha
Helix 89
AJ8
F
28 39Right-handed alpha
Helix 90
AJ9
F
44 54Right-handed alpha
Helix 91
AK1
F
65 75Right-handed alpha
Helix 92
AK2
F
78 92Right-handed alpha
Helix 93
AK3
F
102 112Right-handed alpha
Helix 94
AK4
F
117 128Right-handed alpha
Helix 95
AK5
F
138 146Right-handed alpha
Helix 96
AK6
H
5 20Right-handed alpha
Helix 97
AK7
H
28 39Right-handed alpha
Helix 98
AK8
H
44 54Right-handed alpha
Helix 99
AK9
H
65 75Right-handed alpha
Helix 100
AL1
H
78 92Right-handed alpha
Helix 101
AL2
H
102 112Right-handed alpha
Helix 102
AL3
H
117 128Right-handed alpha
Helix 103
AL4
H
138 146Right-handed alpha
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There are 8 sheets in PDB entry 7BYM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
26 27first strand
Strand 2
B
63 64anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
99 101first strand
Strand 2
B
135 137anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
26 27first strand
Strand 2
D
63 64anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
99 101first strand
Strand 2
D
135 137anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
26 27first strand
Strand 2
F
63 64anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
99 101first strand
Strand 2
F
135 137anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
26 27first strand
Strand 2
H
63 64anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
99 101first strand
Strand 2
H
135 137anti-parallel
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