Analysis of interatomic Contacts of Structural Units in PDB entry:
7BYY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7BYY entry

There are 4 chains in PDB entry 7BYY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 9HIS 188
B
 LEU 10HIS 188
C
 ILE 12HIS 187
D
 PRO 11HIS 183
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 29 helices in PDB entry 7BYY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
34 44Right-handed alpha
Helix 2
AA2
A
44 51Right-handed alpha
Helix 3
AA3
A
81 83Right-handed 310
Helix 4
AA4
A
107 110Right-handed 310
Helix 5
AA5
A
113 133Right-handed alpha
Helix 6
AA6
A
143 145Right-handed 310
Helix 7
AA7
A
146 152Right-handed alpha
Helix 8
AA8
A
174 188Right-handed alpha
Helix 9
AA9
B
34 44Right-handed alpha
Helix 10
AB1
B
44 51Right-handed alpha
Helix 11
AB2
B
107 110Right-handed 310
Helix 12
AB3
B
113 131Right-handed alpha
Helix 13
AB4
B
143 153Right-handed alpha
Helix 14
AB5
B
174 183Right-handed alpha
Helix 15
AB6
C
34 43Right-handed alpha
Helix 16
AB7
C
44 51Right-handed alpha
Helix 17
AB8
C
80 84Right-handed alpha
Helix 18
AB9
C
113 133Right-handed alpha
Helix 19
AC1
C
143 145Right-handed 310
Helix 20
AC2
C
146 152Right-handed alpha
Helix 21
AC3
C
174 186Right-handed alpha
Helix 22
AC4
D
26 30Right-handed 310
Helix 23
AC5
D
34 44Right-handed alpha
Helix 24
AC6
D
44 51Right-handed alpha
Helix 25
AC7
D
81 83Right-handed 310
Helix 26
AC8
D
107 110Right-handed 310
Helix 27
AC9
D
113 131Right-handed alpha
Helix 28
AD1
D
146 153Right-handed alpha
Helix 29
AD2
D
174 181Right-handed alpha
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There are 4 sheets in PDB entry 7BYY. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
13 17first strand
Strand 2
A
55 61anti-parallel
Strand 3
A
67 79anti-parallel
Strand 4
A
94 105anti-parallel
Strand 5
A
137 142parallel
Strand 6
A
168 173anti-parallel
Strand 7
A
156 157anti-parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
13 17first strand
Strand 2
B
55 61anti-parallel
Strand 3
B
67 79anti-parallel
Strand 4
B
94 105anti-parallel
Strand 5
B
137 142parallel
Strand 6
B
168 173anti-parallel
Strand 7
B
156 157anti-parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
13 17first strand
Strand 2
C
55 61anti-parallel
Strand 3
C
67 79anti-parallel
Strand 4
C
94 105anti-parallel
Strand 5
C
137 142parallel
Strand 6
C
168 173anti-parallel
Strand 7
C
156 157anti-parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
13 17first strand
Strand 2
D
55 61anti-parallel
Strand 3
D
67 79anti-parallel
Strand 4
D
94 105anti-parallel
Strand 5
D
137 142parallel
Strand 6
D
168 173anti-parallel
Strand 7
D
156 157anti-parallel
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